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The map label for this gene is yebC [C]

Identifier: 54025672

GI number: 54025672

Start: 3917585

End: 3918340

Strand: Reverse

Name: yebC [C]

Synonym: nfa37020

Alternate gene names: 54025672

Gene position: 3918340-3917585 (Counterclockwise)

Preceding gene: 54025673

Following gene: 54025669

Centisome position: 65.08

GC content: 67.06

Gene sequence:

>756_bases
ATGAGCGGCCACTCCAAATGGGCCACCACCAAGCACAAGAAGGCCGCGATCGACGCGAAGCGGGGGAAGCTCTTCGCGAA
GTTGATCAAGAACATCGAGGTGGCGGCACGTACGGGTGGCGGTGATCCCGAAGGCAACCCCACGCTGTACGACGCCATCC
AGAAGGCGAAGAAGTCCTCGGTCCCCAACGACAACATCGAGCGCGCGCGCAAGCGCGGCGCCGGTGAGGAGGCGGGCGGC
GCCGACTGGCAGACGATCATGTACGAGGGCTACGGCCCCAACGGCGTCGCGGTCCTCATCGAGTGCCTCACCGACAACCG
CAACCGGGCGGCGGGCGAGGTGCGGGTGGCCATGACCCGCAACGGCGGCAACATGGCCGACCCGGGCTCGGTCGCCTACC
TGTTCCACCGCAAGGGCATCGTCACCCTGGAGAAGAACGGCCTGTCCGAGGACGACGTGCTGATGGCCGTGCTCGACGCC
GGCGCCGAGGAGGTCAACGATCTCGGCGAGTCCTTCGAGATCATCAGCGAGCCGGGCGATCTGGTCGCGGTGCGGTCGGC
ACTGCAGTCGGCGGGCATCGACTACGAGTCGGCCGAGTCGGGCTTCCAGCCCTCGGTCAGCGTCGCGGTGGACGCCGAGG
GTGCGCGCAAGGTGTTCAAGCTGATCGATGCCCTCGAGGACAGCGACGACGTGCAGAACGTCTACACCAACGTCGACGTC
TCCGACGAGGTCCTCGCCCAGCTCGACACCGACTGA

Upstream 100 bases:

>100_bases
CGGGTACACCGGATGTTCGTCGACATCGTGCGGGCCGCCGGAGACCGAGCGGGTAACGTACACACTCCAGACGTGCAACC
GACCTGAAGGAAGTAGGGGA

Downstream 100 bases:

>100_bases
GCGGGTCAGCGGCCGGAGTCGGCAGCGGAGCGTGACCACGGAGGCCGTCCCGCTCAGGCGCAGGTGGACACCGACTGAGC
GGGTCAGCGGCCGGAGTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGG
ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFHRKGIVTLEKNGLSEDDVLMAVLDA
GAEEVNDLGESFEIISEPGDLVAVRSALQSAGIDYESAESGFQPSVSVAVDAEGARKVFKLIDALEDSDDVQNVYTNVDV
SDEVLAQLDTD

Sequences:

>Translated_251_residues
MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGG
ADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFHRKGIVTLEKNGLSEDDVLMAVLDA
GAEEVNDLGESFEIISEPGDLVAVRSALQSAGIDYESAESGFQPSVSVAVDAEGARKVFKLIDALEDSDDVQNVYTNVDV
SDEVLAQLDTD
>Mature_250_residues
SGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKSSVPNDNIERARKRGAGEEAGGA
DWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTRNGGNMADPGSVAYLFHRKGIVTLEKNGLSEDDVLMAVLDAG
AEEVNDLGESFEIISEPGDLVAVRSALQSAGIDYESAESGFQPSVSVAVDAEGARKVFKLIDALEDSDDVQNVYTNVDVS
DEVLAQLDTD

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=248, Percent_Identity=29.4354838709677, Blast_Score=121, Evalue=6e-28,
Organism=Escherichia coli, GI1788171, Length=249, Percent_Identity=48.995983935743, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1788294, Length=239, Percent_Identity=36.4016736401674, Blast_Score=130, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17556100, Length=245, Percent_Identity=24.8979591836735, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=35.361216730038, Blast_Score=133, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24583305, Length=251, Percent_Identity=26.6932270916335, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3702_NOCFA (Q5YTE1)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_119914.1
- ProteinModelPortal:   Q5YTE1
- SMR:   Q5YTE1
- GeneID:   3108882
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa37020
- NMPDR:   fig|247156.1.peg.3607
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   NFAR247156:NFA37020-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26744; Mature: 26613

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKSS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCC
VPNDNIERARKRGAGEEAGGADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTR
CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEE
NGGNMADPGSVAYLFHRKGIVTLEKNGLSEDDVLMAVLDAGAEEVNDLGESFEIISEPGD
CCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
LVAVRSALQSAGIDYESAESGFQPSVSVAVDAEGARKVFKLIDALEDSDDVQNVYTNVDV
HHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHCCCCC
SDEVLAQLDTD
CHHHHHHCCCC
>Mature Secondary Structure 
SGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEVAARTGGGDPEGNPTLYDAIQKAKKSS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCC
VPNDNIERARKRGAGEEAGGADWQTIMYEGYGPNGVAVLIECLTDNRNRAAGEVRVAMTR
CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEE
NGGNMADPGSVAYLFHRKGIVTLEKNGLSEDDVLMAVLDAGAEEVNDLGESFEIISEPGD
CCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
LVAVRSALQSAGIDYESAESGFQPSVSVAVDAEGARKVFKLIDALEDSDDVQNVYTNVDV
HHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHCCCCC
SDEVLAQLDTD
CHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA