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The map label for this gene is ymdB [C]

Identifier: 54025669

GI number: 54025669

Start: 3915950

End: 3916453

Strand: Reverse

Name: ymdB [C]

Synonym: nfa36990

Alternate gene names: 54025669

Gene position: 3916453-3915950 (Counterclockwise)

Preceding gene: 54025672

Following gene: 54025668

Centisome position: 65.04

GC content: 73.41

Gene sequence:

>504_bases
ATGGTCTCGATCGAACTCGTCCGCGGGGACATCACCGAACAGCGGGTGGACGCGGTGGTCAACGCCGCCAACTCGTCGCT
GTCGGGCGGCGGCGGGGTGGACGGCGCGATCCACCGTCGCGGCGGCCCGGCCATCCTCGCCGAGTGCCGGGAGCTGCGGG
CCACCCGCTATCCGGACGGGCTGCCGACCGGGCAGGCTGTCGCGACCACCGCGGGTGAGTTGCCCGCGCGCTGGGTGATC
CACACGGTCGGACCGGTGTGGTCGCCCCGGCAGGACCGCTCGGCCCTGCTGGCCTCCTGCTATCGCGAATCCCTGCGCGT
GGCGGACGAACTCGGCGCGAGGACGGTGGCCTTCCCGGCGATCTCCACCGGCATCTACGGCTGGCCGATGGACGACGGTG
CCCGCATCGCCGTCGAGACGGTGCGGGCGACCGCCACCGCGGTCGAGACGGTCCGGTTCGTGCTCTTCGACCGCGCCGCC
TACGAGGCATTCGCCGCCCGCTAG

Upstream 100 bases:

>100_bases
ATCGGCGATCGCGCCGGCCACCTCGTCCACGCCAAAAGCGTAACTACTTGGTTACGCGTTGTCGAGACCCGGCGCGTGCG
GGATGCGGCAGAATCCGGGC

Downstream 100 bases:

>100_bases
CCCGCGCGGTGCCGCCCGGGCGGTCGGCCGGCGCGGGCCGGGCCGGGCCGGTCCCGCCGAGGATCTCGAGATAGTGCGGG
TTGGACATCAGTCCCAGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MVSIELVRGDITEQRVDAVVNAANSSLSGGGGVDGAIHRRGGPAILAECRELRATRYPDGLPTGQAVATTAGELPARWVI
HTVGPVWSPRQDRSALLASCYRESLRVADELGARTVAFPAISTGIYGWPMDDGARIAVETVRATATAVETVRFVLFDRAA
YEAFAAR

Sequences:

>Translated_167_residues
MVSIELVRGDITEQRVDAVVNAANSSLSGGGGVDGAIHRRGGPAILAECRELRATRYPDGLPTGQAVATTAGELPARWVI
HTVGPVWSPRQDRSALLASCYRESLRVADELGARTVAFPAISTGIYGWPMDDGARIAVETVRATATAVETVRFVLFDRAA
YEAFAAR
>Mature_167_residues
MVSIELVRGDITEQRVDAVVNAANSSLSGGGGVDGAIHRRGGPAILAECRELRATRYPDGLPTGQAVATTAGELPARWVI
HTVGPVWSPRQDRSALLASCYRESLRVADELGARTVAFPAISTGIYGWPMDDGARIAVETVRATATAVETVRFVLFDRAA
YEAFAAR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=175, Percent_Identity=44.5714285714286, Blast_Score=145, Evalue=2e-35,
Organism=Homo sapiens, GI13569840, Length=142, Percent_Identity=50, Blast_Score=132, Evalue=2e-31,
Organism=Homo sapiens, GI207450721, Length=154, Percent_Identity=34.4155844155844, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI8923143, Length=154, Percent_Identity=34.4155844155844, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI154813199, Length=137, Percent_Identity=35.7664233576642, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI20336746, Length=159, Percent_Identity=30.188679245283, Blast_Score=83, Evalue=9e-17,
Organism=Homo sapiens, GI226371718, Length=148, Percent_Identity=33.7837837837838, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371716, Length=148, Percent_Identity=33.7837837837838, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371714, Length=148, Percent_Identity=33.7837837837838, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371712, Length=148, Percent_Identity=33.7837837837838, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371710, Length=148, Percent_Identity=33.7837837837838, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371706, Length=148, Percent_Identity=33.7837837837838, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI93141018, Length=162, Percent_Identity=26.5432098765432, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI93141020, Length=162, Percent_Identity=26.5432098765432, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI4758496, Length=162, Percent_Identity=26.5432098765432, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787283, Length=159, Percent_Identity=51.5723270440252, Blast_Score=145, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17538214, Length=166, Percent_Identity=40.3614457831325, Blast_Score=112, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 17753; Mature: 17753

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIELVRGDITEQRVDAVVNAANSSLSGGGGVDGAIHRRGGPAILAECRELRATRYPDG
CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCC
LPTGQAVATTAGELPARWVIHTVGPVWSPRQDRSALLASCYRESLRVADELGARTVAFPA
CCCCCCHHHCCCCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHH
ISTGIYGWPMDDGARIAVETVRATATAVETVRFVLFDRAAYEAFAAR
HHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVSIELVRGDITEQRVDAVVNAANSSLSGGGGVDGAIHRRGGPAILAECRELRATRYPDG
CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCC
LPTGQAVATTAGELPARWVIHTVGPVWSPRQDRSALLASCYRESLRVADELGARTVAFPA
CCCCCCHHHCCCCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHH
ISTGIYGWPMDDGARIAVETVRATATAVETVRFVLFDRAAYEAFAAR
HHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]