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The map label for this gene is whiA

Identifier: 54025561

GI number: 54025561

Start: 3801137

End: 3802114

Strand: Reverse

Name: whiA

Synonym: nfa35910

Alternate gene names: 54025561

Gene position: 3802114-3801137 (Counterclockwise)

Preceding gene: 54025562

Following gene: 54025559

Centisome position: 63.15

GC content: 74.23

Gene sequence:

>978_bases
ATGACAGCCGAGGTGAAGGACGAGCTGAGCAGGCTCACGGTGTCGCAGGTCAGCTCGCGCAAGGCGGAGTTGTCCGCCCT
GCTCCGGTTCGCGGGCGGCCTGCACATCGTCGGCGGGCGGGTGATCGTCGAGGCCGAGGTGGACATGGGCTCGATCGCTC
GCCGGCTACGCCGGGAGATCTTCGAGCTGTACGGCTACGGCTCCGACGTGCACGTGCTCGGGGCGGGCGGCCTGCGCAAG
ACCTCCCGCTATGTGGTGCGGGTGTCGAAGGAGGGCGAGGCGCTGGCCCGCCAGACCGGCCTGCTCGACGTGCGCGGCCG
TCCGGTGCGCGGCCTGCCCGCCCAGGTGGTCGGCGGCAGCATCGCCGATGCCGAAGCCGCTTGGCGCGGTGCGTTTCTCG
CGCACGGTTCGCTCACCGAACCGGGCCGCTCCTCGGCGCTCGAGGTGAGCTGCCCCGGCCCCGAGGCGGCGCTGGCGCTG
GTCGGTGCGGCGCGCAGGCTGGGCATCACGGCCAAGGCCCGCGAGGTGCGCGGCACCGACCGGGTGGTGGTGCGCGACGG
CGAGGCCATCGGCGCGCTGCTGACCAGGATGGGCGCCCAGGACACCCGGCTCACCTGGGAGGAGCGCCGGATGCGCCGCG
AGGTGCGTGCGACGGCGAACCGGCTGGCCAACTTCGACGACGCCAATCTGCGGCGGTCGGCGCGCGCCGCCGTCGCCGCG
GCCGCGCGGGTGGAGCGGGCGCTCGAGATCCTGGGCGAGGACGTGCCCGACCATCTGGCTGCCGCGGGCAAGCTGCGCGT
GCAGCACCGGCAGGCCTCGCTCGAGGAACTCGGCCAGCTCGCCGACCCGCCGATGACCAAGGACGCGGTCGCCGGCCGAA
TCCGCCGCCTGCTCTCGATGGCCGACCGCCGGGCCAGGGAACTCGGCATCCCCGACACCGAGTCCGCGGTCACCGCCGAA
CTGCTCGACGAAGCCTGA

Upstream 100 bases:

>100_bases
GGCAGCCCCGGCCGCAGCTGGCGGGGCTTCGGGTGGAGGGACGGCACATGGGCGCGGATGTGCGGTCCGGGTCGGGTGGA
AAGGAGCGCGTCTCGTGGCG

Downstream 100 bases:

>100_bases
GTCGGCGGCCGGAGGCTGATCAGGCGGCCGGTTCGCGCAGCATCGCCAGGGTGGTCGGGCCGTCGTCGGGGATCTCGACG
GTCGCGGTGACCCGGAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTAEVKDELSRLTVSQVSSRKAELSALLRFAGGLHIVGGRVIVEAEVDMGSIARRLRREIFELYGYGSDVHVLGAGGLRK
TSRYVVRVSKEGEALARQTGLLDVRGRPVRGLPAQVVGGSIADAEAAWRGAFLAHGSLTEPGRSSALEVSCPGPEAALAL
VGAARRLGITAKAREVRGTDRVVVRDGEAIGALLTRMGAQDTRLTWEERRMRREVRATANRLANFDDANLRRSARAAVAA
AARVERALEILGEDVPDHLAAAGKLRVQHRQASLEELGQLADPPMTKDAVAGRIRRLLSMADRRARELGIPDTESAVTAE
LLDEA

Sequences:

>Translated_325_residues
MTAEVKDELSRLTVSQVSSRKAELSALLRFAGGLHIVGGRVIVEAEVDMGSIARRLRREIFELYGYGSDVHVLGAGGLRK
TSRYVVRVSKEGEALARQTGLLDVRGRPVRGLPAQVVGGSIADAEAAWRGAFLAHGSLTEPGRSSALEVSCPGPEAALAL
VGAARRLGITAKAREVRGTDRVVVRDGEAIGALLTRMGAQDTRLTWEERRMRREVRATANRLANFDDANLRRSARAAVAA
AARVERALEILGEDVPDHLAAAGKLRVQHRQASLEELGQLADPPMTKDAVAGRIRRLLSMADRRARELGIPDTESAVTAE
LLDEA
>Mature_324_residues
TAEVKDELSRLTVSQVSSRKAELSALLRFAGGLHIVGGRVIVEAEVDMGSIARRLRREIFELYGYGSDVHVLGAGGLRKT
SRYVVRVSKEGEALARQTGLLDVRGRPVRGLPAQVVGGSIADAEAAWRGAFLAHGSLTEPGRSSALEVSCPGPEAALALV
GAARRLGITAKAREVRGTDRVVVRDGEAIGALLTRMGAQDTRLTWEERRMRREVRATANRLANFDDANLRRSARAAVAAA
ARVERALEILGEDVPDHLAAAGKLRVQHRQASLEELGQLADPPMTKDAVAGRIRRLLSMADRRARELGIPDTESAVTAEL
LDEA

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_NOCFA (Q5YTQ2)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_119803.1
- GeneID:   3107041
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa35910
- NMPDR:   fig|247156.1.peg.3505
- HOGENOM:   HBG322392
- OMA:   VTCPGPE
- ProtClustDB:   CLSK871931
- BioCyc:   NFAR247156:NFA35910-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 34940; Mature: 34809

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAEVKDELSRLTVSQVSSRKAELSALLRFAGGLHIVGGRVIVEAEVDMGSIARRLRREI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEECCCHHHHHHHHHHHH
FELYGYGSDVHVLGAGGLRKTSRYVVRVSKEGEALARQTGLLDVRGRPVRGLPAQVVGGS
HHHHCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHCCCEECCCCCCCCCCHHHHCCC
IADAEAAWRGAFLAHGSLTEPGRSSALEVSCPGPEAALALVGAARRLGITAKAREVRGTD
CHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCC
RVVVRDGEAIGALLTRMGAQDTRLTWEERRMRREVRATANRLANFDDANLRRSARAAVAA
EEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AARVERALEILGEDVPDHLAAAGKLRVQHRQASLEELGQLADPPMTKDAVAGRIRRLLSM
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ADRRARELGIPDTESAVTAELLDEA
HHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TAEVKDELSRLTVSQVSSRKAELSALLRFAGGLHIVGGRVIVEAEVDMGSIARRLRREI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEECCCHHHHHHHHHHHH
FELYGYGSDVHVLGAGGLRKTSRYVVRVSKEGEALARQTGLLDVRGRPVRGLPAQVVGGS
HHHHCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHCCCEECCCCCCCCCCHHHHCCC
IADAEAAWRGAFLAHGSLTEPGRSSALEVSCPGPEAALALVGAARRLGITAKAREVRGTD
CHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCC
RVVVRDGEAIGALLTRMGAQDTRLTWEERRMRREVRATANRLANFDDANLRRSARAAVAA
EEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AARVERALEILGEDVPDHLAAAGKLRVQHRQASLEELGQLADPPMTKDAVAGRIRRLLSM
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ADRRARELGIPDTESAVTAELLDEA
HHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA