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The map label for this gene is yxaF [H]

Identifier: 54025533

GI number: 54025533

Start: 3771585

End: 3772214

Strand: Reverse

Name: yxaF [H]

Synonym: nfa35630

Alternate gene names: 54025533

Gene position: 3772214-3771585 (Counterclockwise)

Preceding gene: 54025538

Following gene: 54025532

Centisome position: 62.65

GC content: 73.33

Gene sequence:

>630_bases
ATGGTTTCCGAGTCGAGACGCCGGATCGAGACGGCCGCGTGCGCGCTGCTGGCCAGGCACGGCTATCACGGTTTCGGTCT
CAAGGCGCTCAGCGCCGCGGCCGGGCTGCCCTACGGGTCGATCTACCACCACTTCCCGGGCGGCAAGGAGGAGATCGCGG
TCGCCGCGATCACCGGCACCGGGCTGGTGTCGGGCCGGATCATCGCCGAGGCGCCCGGGGACGTCTTCGCGACCACGGCC
ACCATGTTCGACTTCATGCGGACGAAGCTGGCGGGCTCGGACTGGACCGAGGGCTGCCCGGTCGGCACCCCCGCCCTCGA
CGGCGGCAGCGACGTGGACGCGGTGCGGAACGCGTGCGTGGCGGCGTTCGACACGATGGAGCGCGCCTACCGCGGGTTGC
TGACCGAACTCGGCCTCGACGAGCGCGCGGCGGGGGAGGTGGCGACGACGGTGGTCGCGGCCTACGAGGGGGCGACCATC
CTGGCGCGCGTGCGCCGCAGCGACGAACCGCTACGGGTCGTCTCGGCGGCGATGGAACGCATGCTGCGCATGATGCTGGC
GGCGCCGGGCGCCGAGCCGGCACCGGCGCTGCGGGGAGACGACGCGAGGCGAGGCGCCGTACCGACCTGA

Upstream 100 bases:

>100_bases
TCCGAGCGCCCGGCGCCCCAGAGCTGATGTCCTGCGCCGCGCGCGCTCGAGTACCGCCACCAGAGGGAGCCTAGTGGGCG
GCGCGGAGCACAATCGAACC

Downstream 100 bases:

>100_bases
CCGCCGCGCGGATTCGCCCGCGCGCGGTGTCGGGGCGGGCGGGTCTTGACTGGAAAGAACGTTCTAGCGACACTCGGTCG
ATGAAACGTCTGATGCTCTC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MVSESRRRIETAACALLARHGYHGFGLKALSAAAGLPYGSIYHHFPGGKEEIAVAAITGTGLVSGRIIAEAPGDVFATTA
TMFDFMRTKLAGSDWTEGCPVGTPALDGGSDVDAVRNACVAAFDTMERAYRGLLTELGLDERAAGEVATTVVAAYEGATI
LARVRRSDEPLRVVSAAMERMLRMMLAAPGAEPAPALRGDDARRGAVPT

Sequences:

>Translated_209_residues
MVSESRRRIETAACALLARHGYHGFGLKALSAAAGLPYGSIYHHFPGGKEEIAVAAITGTGLVSGRIIAEAPGDVFATTA
TMFDFMRTKLAGSDWTEGCPVGTPALDGGSDVDAVRNACVAAFDTMERAYRGLLTELGLDERAAGEVATTVVAAYEGATI
LARVRRSDEPLRVVSAAMERMLRMMLAAPGAEPAPALRGDDARRGAVPT
>Mature_209_residues
MVSESRRRIETAACALLARHGYHGFGLKALSAAAGLPYGSIYHHFPGGKEEIAVAAITGTGLVSGRIIAEAPGDVFATTA
TMFDFMRTKLAGSDWTEGCPVGTPALDGGSDVDAVRNACVAAFDTMERAYRGLLTELGLDERAAGEVATTVVAAYEGATI
LARVRRSDEPLRVVSAAMERMLRMMLAAPGAEPAPALRGDDARRGAVPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21838; Mature: 21838

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSESRRRIETAACALLARHGYHGFGLKALSAAAGLPYGSIYHHFPGGKEEIAVAAITGT
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEECC
GLVSGRIIAEAPGDVFATTATMFDFMRTKLAGSDWTEGCPVGTPALDGGSDVDAVRNACV
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AAFDTMERAYRGLLTELGLDERAAGEVATTVVAAYEGATILARVRRSDEPLRVVSAAMER
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
MLRMMLAAPGAEPAPALRGDDARRGAVPT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVSESRRRIETAACALLARHGYHGFGLKALSAAAGLPYGSIYHHFPGGKEEIAVAAITGT
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEECC
GLVSGRIIAEAPGDVFATTATMFDFMRTKLAGSDWTEGCPVGTPALDGGSDVDAVRNACV
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AAFDTMERAYRGLLTELGLDERAAGEVATTVVAAYEGATILARVRRSDEPLRVVSAAMER
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
MLRMMLAAPGAEPAPALRGDDARRGAVPT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]