Click here to switch to the map view.

The map label for this gene is 54025397

Identifier: 54025397

GI number: 54025397

Start: 3631766

End: 3632845

Strand: Reverse

Name: 54025397

Synonym: nfa34270

Alternate gene names: NA

Gene position: 3632845-3631766 (Counterclockwise)

Preceding gene: 54025400

Following gene: 54025394

Centisome position: 60.33

GC content: 72.41

Gene sequence:

>1080_bases
ATGCGATTGCGGCGCAGCAGACCCGACGGCCCCGGCTTCCTGCGGGTGCGGCGCGGGCGCGGCTTCTCCTACGTCACCAG
CGACGGCGAAACCGTCACCGACGAGGAGACCCTCGCGCGGATCAAGGCACTGGTCATCCCGCCCGCCTGGCGGGACGTGT
GGATCTGCCCCTACCCGAACGGGCACCTGCAGGCCGTCGGTGTCGACGCCGCCGGGCGCAAGCAGTACCTCTACCACGAG
CAGTGGCGCCGCGAACGCGACGAAGTGAAGTTCGACCGGGTGCTGGAGATGGCGGCCCGGCTACCGGAGTTCCGCGCGCA
GATCGCCGCCGATCTGGAGCTGCCCGGCCTGGAGCGGCGCCGGGTCGAGGCGGTCGCGCTCGGGCTGATCGATCGCGGCG
TCTTCCGGGTGGGCGGCGAGGAGTACGCGCAGGAGAACGGCACCAGGGGCATGGCCACCCTGCTCCGTGCGCAGGTCACG
GTGTCGGGCGCGGAAATGACCTTCGACTACATCGCCAAGAGCGGGATCCGCCGCCGGGTCCGCATCGAGGATCCCGCCCT
GGCCAGGGCGGTGCGCGCGCTGAAACGCAGCCGCGCCGAGTCCGAGCGTCTGCTCACCTACCGCTGCCCAGACGGGGCCT
ACCGCGAACTGCACGCCGAGGAGATCAACGCGCGCTTCAAGGAGCTGGTCGGCGAGGAGTGCAGCGCCAAGGACCTGCGC
ACCTGGCAGGGCACGGTGCTGGCCGCCGTCGGGTTCGGCGCCATCGCGCCGCCGACCTCGCAGCGCGCACGCAACAAGGC
GATCCGGGCGGTGATGGTGGACGTGTCCAACGCGTTGGGCAACACCCCCGCCATCGCGAAGTCCTCCTATGTGGACCCGC
GGGTGGTGGCCGCGTTCGAGGAGGGCGCGACGATCGCGGCGGCGATGCGGCGGGCCGACCGCGTCACCGATCTCACCGAG
CAACAGCAGATCATCGACCGGGCCGTCATCCGGCTGATCACCGCGCAGCAGAAGCGGGCGCGCCGGGCGGCGCGAGCCGT
CCGGGCCGGGGTGGCCAGGCAGGCGCGCGCGGCGGCGTGA

Upstream 100 bases:

>100_bases
CATGATCAACAGTGCCCGGCCGTTGTGAAACACCCCTCCTCCATACCCATAGTCGGCGTGTTCGTGGGTACCCCGCCCGC
ACGATGTGGAAGGAGTCCCC

Downstream 100 bases:

>100_bases
GGGTCAGAAGCGTCCTGTCACACCGGCTTTCGGTGTCTCCGGCGCCCGGGTGATCCGACCGCCGACCCGCTCCTGCACCG
TGAACCCGTAGCGGCGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerase ; Eukaryotic-Like DNA poisomerase I; DNA poisomerasei; -Like DNA poisomerase I; Type I DNA poisomerase

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MRLRRSRPDGPGFLRVRRGRGFSYVTSDGETVTDEETLARIKALVIPPAWRDVWICPYPNGHLQAVGVDAAGRKQYLYHE
QWRRERDEVKFDRVLEMAARLPEFRAQIAADLELPGLERRRVEAVALGLIDRGVFRVGGEEYAQENGTRGMATLLRAQVT
VSGAEMTFDYIAKSGIRRRVRIEDPALARAVRALKRSRAESERLLTYRCPDGAYRELHAEEINARFKELVGEECSAKDLR
TWQGTVLAAVGFGAIAPPTSQRARNKAIRAVMVDVSNALGNTPAIAKSSYVDPRVVAAFEEGATIAAAMRRADRVTDLTE
QQQIIDRAVIRLITAQQKRARRAARAVRAGVARQARAAA

Sequences:

>Translated_359_residues
MRLRRSRPDGPGFLRVRRGRGFSYVTSDGETVTDEETLARIKALVIPPAWRDVWICPYPNGHLQAVGVDAAGRKQYLYHE
QWRRERDEVKFDRVLEMAARLPEFRAQIAADLELPGLERRRVEAVALGLIDRGVFRVGGEEYAQENGTRGMATLLRAQVT
VSGAEMTFDYIAKSGIRRRVRIEDPALARAVRALKRSRAESERLLTYRCPDGAYRELHAEEINARFKELVGEECSAKDLR
TWQGTVLAAVGFGAIAPPTSQRARNKAIRAVMVDVSNALGNTPAIAKSSYVDPRVVAAFEEGATIAAAMRRADRVTDLTE
QQQIIDRAVIRLITAQQKRARRAARAVRAGVARQARAAA
>Mature_359_residues
MRLRRSRPDGPGFLRVRRGRGFSYVTSDGETVTDEETLARIKALVIPPAWRDVWICPYPNGHLQAVGVDAAGRKQYLYHE
QWRRERDEVKFDRVLEMAARLPEFRAQIAADLELPGLERRRVEAVALGLIDRGVFRVGGEEYAQENGTRGMATLLRAQVT
VSGAEMTFDYIAKSGIRRRVRIEDPALARAVRALKRSRAESERLLTYRCPDGAYRELHAEEINARFKELVGEECSAKDLR
TWQGTVLAAVGFGAIAPPTSQRARNKAIRAVMVDVSNALGNTPAIAKSSYVDPRVVAAFEEGATIAAAMRRADRVTDLTE
QQQIIDRAVIRLITAQQKRARRAARAVRAGVARQARAAA

Specific function: Unknown

COG id: COG3569

COG function: function code L; Topoisomerase IB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40030; Mature: 40030

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRRSRPDGPGFLRVRRGRGFSYVTSDGETVTDEETLARIKALVIPPAWRDVWICPYPN
CCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC
GHLQAVGVDAAGRKQYLYHEQWRRERDEVKFDRVLEMAARLPEFRAQIAADLELPGLERR
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHH
RVEAVALGLIDRGVFRVGGEEYAQENGTRGMATLLRAQVTVSGAEMTFDYIAKSGIRRRV
HHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCCEE
RIEDPALARAVRALKRSRAESERLLTYRCPDGAYRELHAEEINARFKELVGEECSAKDLR
EECCHHHHHHHHHHHHHHCHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
TWQGTVLAAVGFGAIAPPTSQRARNKAIRAVMVDVSNALGNTPAIAKSSYVDPRVVAAFE
HHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHEEHHHHCCCCCCCCCCCCCCCHHEEEHH
EGATIAAAMRRADRVTDLTEQQQIIDRAVIRLITAQQKRARRAARAVRAGVARQARAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLRRSRPDGPGFLRVRRGRGFSYVTSDGETVTDEETLARIKALVIPPAWRDVWICPYPN
CCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC
GHLQAVGVDAAGRKQYLYHEQWRRERDEVKFDRVLEMAARLPEFRAQIAADLELPGLERR
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHH
RVEAVALGLIDRGVFRVGGEEYAQENGTRGMATLLRAQVTVSGAEMTFDYIAKSGIRRRV
HHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCCEE
RIEDPALARAVRALKRSRAESERLLTYRCPDGAYRELHAEEINARFKELVGEECSAKDLR
EECCHHHHHHHHHHHHHHCHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
TWQGTVLAAVGFGAIAPPTSQRARNKAIRAVMVDVSNALGNTPAIAKSSYVDPRVVAAFE
HHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHEEHHHHCCCCCCCCCCCCCCCHHEEEHH
EGATIAAAMRRADRVTDLTEQQQIIDRAVIRLITAQQKRARRAARAVRAGVARQARAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA