Click here to switch to the map view.

The map label for this gene is yabD [H]

Identifier: 54020653

GI number: 54020653

Start: 847831

End: 849078

Strand: Reverse

Name: yabD [H]

Synonym: mhp674

Alternate gene names: 54020653

Gene position: 849078-847831 (Counterclockwise)

Preceding gene: 54020654

Following gene: 54020652

Centisome position: 95.11

GC content: 25.56

Gene sequence:

>1248_bases
ATGTATTTAAAAATTCAGCAATTTTTACCGCGGTATTTAGAATTATTTCAGAAAACTATTAAAGAATTTAATTTGGAATT
AAATGTAGTAACAAAAAAAGGTAAAAATAAAATCAGTAATTTTGATTATTATCAAAATTTTGAAACAAATTATGAATTTT
TGGTTATTGATGAGCATAAACAAGCTGATTTTATTTTTGCTTTTTTTGTACTTTCAAGAAAAGGACAAACTTTTTATCTA
AATTTGCCTTTTTTTAGTCAGTTTTTAGATAAAAACTGAATTAATATTATTGGTGAATTTATCCTCGATTTTATAGAAGA
AAATTATCATTTTGAAACTTTTTATGTTCAAATTAGCAATTTGGGCATAAAAATTAATAATTTTTTTCAAAAATTTGCCA
TATCTTTTGATGGCAATTCAAATACTTTTAAGTTTAATTTGGTAAAAAGATACGAATTTATCGACATTCACTGCCATCCT
TTTTCAGAATATTTTCAAGATTCAAAAGCACAAGTTGATAATTGGTTTAAAAAAAATATTGGACTTATTTTCGTTGTTGG
AACTTCATGAGAATATCTTGAAGAAATTAAAAAAATAGGTAATTATTCAAAAAAAATCTATAAAATCATAGGGATTCATC
CAACTTTGGTCGCAGCAAATGATAATTTTTCCTTACTTGAAAATCATATTGATGATAAAGTTTTAGCCATCGGCGAAGTC
GGTCTTGATTTTTACTATGAAAATAATCCGCCAAAAGAAGTCCAAATAAAAGCGCTTTTGGATCAAATTCAGATCGCAAA
ATCAAAAAAAATCCCAGTTATGTTACATATCCGCGATAAGTCAGGTGAAAATCAAGCAATGAAATTAATTTCAGAAATTG
TAACTAAATTTTCTGAAATTAATTTCATATTTCATAATTTTTCAACAAATTATGAAATATTTCAAAAATTAGTAAAGAAA
AACAACTGTTTTTTTTCATTTTCTGGAGTTATTACCTTCAAAAAAAGCATTGAATTAAGAAGAATAATTAAAGAAACCCC
GCTTGAGAAAATTTTTACCGAAACCGATGTGCCTTATTTAAGCCCTGAACCGAATCGCCAACTTTGACCAAATGTTTCTC
CCCAAATTCAGTGAACTTATCAAACGATAGCAAATTTAAAAAATTTGACAAAAATAGAACTTTCTGAAATAATTTATAGA
AATGTAAGGAAAATTTTTAAGGTAAAAAATGCAAAAACCGGTTCCTAA

Upstream 100 bases:

>100_bases
TCATCTTATTACTTTCTCCTTTTTATATTATAATTAAAAATTGTATTATAATAAAAGAAAATTATAATAAATTTTTATTT
ATTAATTATCAAAATTAACT

Downstream 100 bases:

>100_bases
GAAGCGTTTAGGTCAGAATTTTTTAAAAGATAGAAAAATTGCTGAAAAAATAGTTGAAAATATTGATCTTAAAAACAAAG
AAATTATCGAAATTGGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MYLKIQQFLPRYLELFQKTIKEFNLELNVVTKKGKNKISNFDYYQNFETNYEFLVIDEHKQADFIFAFFVLSRKGQTFYL
NLPFFSQFLDKNWINIIGEFILDFIEENYHFETFYVQISNLGIKINNFFQKFAISFDGNSNTFKFNLVKRYEFIDIHCHP
FSEYFQDSKAQVDNWFKKNIGLIFVVGTSWEYLEEIKKIGNYSKKIYKIIGIHPTLVAANDNFSLLENHIDDKVLAIGEV
GLDFYYENNPPKEVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSEINFIFHNFSTNYEIFQKLVKK
NNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSPEPNRQLWPNVSPQIQWTYQTIANLKNLTKIELSEIIYR
NVRKIFKVKNAKTGS

Sequences:

>Translated_415_residues
MYLKIQQFLPRYLELFQKTIKEFNLELNVVTKKGKNKISNFDYYQNFETNYEFLVIDEHKQADFIFAFFVLSRKGQTFYL
NLPFFSQFLDKN*INIIGEFILDFIEENYHFETFYVQISNLGIKINNFFQKFAISFDGNSNTFKFNLVKRYEFIDIHCHP
FSEYFQDSKAQVDNWFKKNIGLIFVVGTS*EYLEEIKKIGNYSKKIYKIIGIHPTLVAANDNFSLLENHIDDKVLAIGEV
GLDFYYENNPPKEVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSEINFIFHNFSTNYEIFQKLVKK
NNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSPEPNRQL*PNVSPQIQ*TYQTIANLKNLTKIELSEIIYR
NVRKIFKVKNAKTGS
>Mature_415_residues
MYLKIQQFLPRYLELFQKTIKEFNLELNVVTKKGKNKISNFDYYQNFETNYEFLVIDEHKQADFIFAFFVLSRKGQTFYL
NLPFFSQFLDKN*INIIGEFILDFIEENYHFETFYVQISNLGIKINNFFQKFAISFDGNSNTFKFNLVKRYEFIDIHCHP
FSEYFQDSKAQVDNWFKKNIGLIFVVGTS*EYLEEIKKIGNYSKKIYKIIGIHPTLVAANDNFSLLENHIDDKVLAIGEV
GLDFYYENNPPKEVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSEINFIFHNFSTNYEIFQKLVKK
NNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSPEPNRQL*PNVSPQIQ*TYQTIANLKNLTKIELSEIIYR
NVRKIFKVKNAKTGS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=209, Percent_Identity=28.7081339712919, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=28.7822878228782, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=28.4132841328413, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=27.6363636363636, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=27.8969957081545, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI1787342, Length=271, Percent_Identity=27.6752767527675, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082439, Length=265, Percent_Identity=25.6603773584906, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI48994985, Length=257, Percent_Identity=26.4591439688716, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17543026, Length=195, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565396, Length=219, Percent_Identity=27.3972602739726, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 48413; Mature: 48413

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKIQQFLPRYLELFQKTIKEFNLELNVVTKKGKNKISNFDYYQNFETNYEFLVIDEHK
CEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHCCCCCCEEEEEEECCC
QADFIFAFFVLSRKGQTFYLNLPFFSQFLDKNINIIGEFILDFIEENYHFETFYVQISNL
CCHHEEEEEHHHCCCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC
GIKINNFFQKFAISFDGNSNTFKFNLVKRYEFIDIHCHPFSEYFQDSKAQVDNWFKKNIG
CEEHHHHHHHEEEEECCCCCEEEEEEEEEEEEEEEEECCCHHHHCCCHHHHHHHHHCCCC
LIFVVGTSEYLEEIKKIGNYSKKIYKIIGIHPTLVAANDNFSLLENHIDDKVLAIGEVGL
EEEEECCHHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCEEEEEEECE
DFYYENNPPKEVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSEINF
EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEE
IFHNFSTNYEIFQKLVKKNNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSP
EEECCCCCHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
EPNRQLPNVSPQIQTYQTIANLKNLTKIELSEIIYRNVRKIFKVKNAKTGS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYLKIQQFLPRYLELFQKTIKEFNLELNVVTKKGKNKISNFDYYQNFETNYEFLVIDEHK
CEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHCCCCCCEEEEEEECCC
QADFIFAFFVLSRKGQTFYLNLPFFSQFLDKNINIIGEFILDFIEENYHFETFYVQISNL
CCHHEEEEEHHHCCCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC
GIKINNFFQKFAISFDGNSNTFKFNLVKRYEFIDIHCHPFSEYFQDSKAQVDNWFKKNIG
CEEHHHHHHHEEEEECCCCCEEEEEEEEEEEEEEEEECCCHHHHCCCHHHHHHHHHCCCC
LIFVVGTSEYLEEIKKIGNYSKKIYKIIGIHPTLVAANDNFSLLENHIDDKVLAIGEVGL
EEEEECCHHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCEEEEEEECE
DFYYENNPPKEVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSEINF
EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEE
IFHNFSTNYEIFQKLVKKNNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSP
EEECCCCCHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
EPNRQLPNVSPQIQTYQTIANLKNLTKIELSEIIYRNVRKIFKVKNAKTGS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]