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The map label for this gene is deoC

Identifier: 54020571

GI number: 54020571

Start: 687087

End: 687752

Strand: Reverse

Name: deoC

Synonym: mhp544

Alternate gene names: 54020571

Gene position: 687752-687087 (Counterclockwise)

Preceding gene: 54020572

Following gene: 54020570

Centisome position: 77.04

GC content: 29.88

Gene sequence:

>666_bases
ATGAATTTTAACGTAATAATTGATCATACACTTTTAAAACCACAGGCAACTTCTCAGGATATTAAAATTTTAATTGAAGA
AGCTAAAAAATATAATTTTGGGGCAATTTGTATTGCGCCAATTTGAGTAAAATTAGCAAAAAAAGAGCTTAAAAATACCA
ATATTAAAATTGTAACAGTAATTGGTTTCCCTTTAGGAAGTCAAATTAGTGCAATAAAACAAAAAGAAGCCTCACTTGCT
ATCGCTCATGGGGCAGATGAAATTGATATGGTGATGAATATTGGTAAATTTAAAGAGAAGGATTTTCAATTTATCATTAA
CGAAATTAATCAAATTAAGAAGGAAATCGGCGCTAAAATTCTTAAAGTTATTATTGAAACAGCTCTTTTATCACCTCATG
AAATTGCTGATGCTACAAAATTAGTTAGTTCAACCAATGCCGATTTTATTAAAACTTCAACAGGATTTTCCTATCGAGGT
GCAAGTGAACAGGATTTAAAAATCATCAAAGAAAACAAAAGCGAAAAATTGGCAATCAAAGCCGCAGGCGGAATTACAAA
TCTAGCCGATATGGAAAATTTTTACCGACTTGGGGCAACAAGGTTTGGTACTTCAAAATCACTAAGTATTATCAAAAATT
TAACTGATAAAAAAAATCAATATTAA

Upstream 100 bases:

>100_bases
AATTAATAAGTAAAATTAGCTAAAAACTTTTACAAAAATGAAAATTTTAAGAAAAAAATAGTATTTTTGAGCAAATTTTA
AGAAAAATTAGGTAATTTAT

Downstream 100 bases:

>100_bases
CTTATTTTTTTTAAAATTTATGTTATAATAAAACTATTTTAAAAAAATAAAAATTGTTTTGTAAAAAAACAATTTTTAAA
GGAGAAATTAATATGGAAAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNFNVIIDHTLLKPQATSQDIKILIEEAKKYNFGAICIAPIWVKLAKKELKNTNIKIVTVIGFPLGSQISAIKQKEASLA
IAHGADEIDMVMNIGKFKEKDFQFIINEINQIKKEIGAKILKVIIETALLSPHEIADATKLVSSTNADFIKTSTGFSYRG
ASEQDLKIIKENKSEKLAIKAAGGITNLADMENFYRLGATRFGTSKSLSIIKNLTDKKNQY

Sequences:

>Translated_221_residues
MNFNVIIDHTLLKPQATSQDIKILIEEAKKYNFGAICIAPI*VKLAKKELKNTNIKIVTVIGFPLGSQISAIKQKEASLA
IAHGADEIDMVMNIGKFKEKDFQFIINEINQIKKEIGAKILKVIIETALLSPHEIADATKLVSSTNADFIKTSTGFSYRG
ASEQDLKIIKENKSEKLAIKAAGGITNLADMENFYRLGATRFGTSKSLSIIKNLTDKKNQY
>Mature_221_residues
MNFNVIIDHTLLKPQATSQDIKILIEEAKKYNFGAICIAPI*VKLAKKELKNTNIKIVTVIGFPLGSQISAIKQKEASLA
IAHGADEIDMVMNIGKFKEKDFQFIINEINQIKKEIGAKILKVIIETALLSPHEIADATKLVSSTNADFIKTSTGFSYRG
ASEQDLKIIKENKSEKLAIKAAGGITNLADMENFYRLGATRFGTSKSLSIIKNLTDKKNQY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790841, Length=211, Percent_Identity=32.2274881516588, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24269; Mature: 24269

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNVIIDHTLLKPQATSQDIKILIEEAKKYNFGAICIAPIVKLAKKELKNTNIKIVTVI
CCCEEEEECEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
GFPLGSQISAIKQKEASLAIAHGADEIDMVMNIGKFKEKDFQFIINEINQIKKEIGAKIL
CCCCCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVIIETALLSPHEIADATKLVSSTNADFIKTSTGFSYRGASEQDLKIIKENKSEKLAIKA
HHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEE
AGGITNLADMENFYRLGATRFGTSKSLSIIKNLTDKKNQY
CCCCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNFNVIIDHTLLKPQATSQDIKILIEEAKKYNFGAICIAPIVKLAKKELKNTNIKIVTVI
CCCEEEEECEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
GFPLGSQISAIKQKEASLAIAHGADEIDMVMNIGKFKEKDFQFIINEINQIKKEIGAKIL
CCCCCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVIIETALLSPHEIADATKLVSSTNADFIKTSTGFSYRGASEQDLKIIKENKSEKLAIKA
HHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEE
AGGITNLADMENFYRLGATRFGTSKSLSIIKNLTDKKNQY
CCCCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA