Click here to switch to the map view.

The map label for this gene is spoU

Identifier: 54020405

GI number: 54020405

Start: 263634

End: 264392

Strand: Reverse

Name: spoU

Synonym: mhp238

Alternate gene names: 54020405

Gene position: 264392-263634 (Counterclockwise)

Preceding gene: 54020406

Following gene: 54020404

Centisome position: 29.62

GC content: 25.43

Gene sequence:

>759_bases
TTGATGAGAATTAAAGAAATTACTTCTTATAATAATCCAATTATAAAAGAAATAGGTAAATTAAAATTAAAAAAATACCG
TAATTTATGGAATAAATTTGTAGTTGAAGGTGAAAAGGATATTGAATCAGCTATCAATGCAGGTTTAGTTTTGAGAATTC
TTACAACAAAAAATAATGTTGAAAAGTACCAAAAAGTTAATGTTGATGTGGTAATAGTTTCTCAAAAAATTCTTGAAAAA
TTATCCCAGCACAAAAGTCCATCAGAAGTAATCGCAGTTTGTAAATCAAAAAAACAACGTAAAATAAAGGATTTTTTAGA
CTCAAAACGACTTGTAATTCTTGAAAATATTCAAAATCCGGGAAATTTAGGAACAATTATTCGAAATTGTTATAGCTTCG
GTTTTGACCTTGTTTATTCAGGTGTTGATCTTTATAATGTTAAAACAATTTCTGCCTCTAAAGGCGCGATTTTTATGGCA
AATATTTACTTTTTAAAAAATATTTCAGATTTTTTTAAATTTGGGCCAAAACAAGAAATTATTATCAGCTCACTTGAAAA
AGATGCTCAAAATCTTATGGATTTTAAAGTAATTCCAGAAAAATCATATACAATAATTTTTGGAAATGAAGGTAAAGGAG
TCTCAAAAAAACTAAATAAATTAGCGGATAAAAAAATTTATATACCCATAAATTTTGAATCATTAAATATTGCGAGCGCG
AATGCAATTTTTTGCCATTTTTTTCAATTAAAAAAATAA

Upstream 100 bases:

>100_bases
AATTTAGCAAACACAGTTGTAATTATAGCATATGAATTCCACAGACAATTAAACTTCAAAAAATTATCACGATTCGAGGT
ACAAAAAGGAACAAATTATC

Downstream 100 bases:

>100_bases
AAAAAATGGCAGAGGTGACAGGAGTCGAACCCGCAACATACGGGGTTGAAGCCCGTTGTTCTACCATTGAACTACACCTC
TAAACCAAAAATTAATTATA

Product: putative tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MMRIKEITSYNNPIIKEIGKLKLKKYRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNVEKYQKVNVDVVIVSQKILEK
LSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIFMA
NIYFLKNISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPINFESLNIASA
NAIFCHFFQLKK

Sequences:

>Translated_252_residues
MMRIKEITSYNNPIIKEIGKLKLKKYRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNVEKYQKVNVDVVIVSQKILEK
LSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIFMA
NIYFLKNISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPINFESLNIASA
NAIFCHFFQLKK
>Mature_252_residues
MMRIKEITSYNNPIIKEIGKLKLKKYRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNVEKYQKVNVDVVIVSQKILEK
LSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIFMA
NIYFLKNISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPINFESLNIASA
NAIFCHFFQLKK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: NA

Molecular weight: Translated: 28800; Mature: 28800

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRIKEITSYNNPIIKEIGKLKLKKYRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEECCCHH
EKYQKVNVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVILENIQNP
HHHHHCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
GNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIFMANIYFLKNISDFFKFGPKQEI
CHHHHHHHHHHHHCHHHHHCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCHHH
IISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPINFESLNIASA
HHHHHHHHHHHHHCEEEECCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEECCEECCCCC
NAIFCHFFQLKK
CHHEEEEEEECC
>Mature Secondary Structure
MMRIKEITSYNNPIIKEIGKLKLKKYRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEECCCHH
EKYQKVNVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVILENIQNP
HHHHHCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
GNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIFMANIYFLKNISDFFKFGPKQEI
CHHHHHHHHHHHHCHHHHHCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCHHH
IISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPINFESLNIASA
HHHHHHHHHHHHHCEEEECCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEECCEECCCCC
NAIFCHFFQLKK
CHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]