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The map label for this gene is oppB

Identifier: 53723156

GI number: 53723156

Start: 2897534

End: 2898472

Strand: Reverse

Name: oppB

Synonym: BPSS2140

Alternate gene names: 53723156

Gene position: 2898472-2897534 (Counterclockwise)

Preceding gene: 53723157

Following gene: 53723155

Centisome position: 91.35

GC content: 67.09

Gene sequence:

>939_bases
ATGCTGGCCTACGCATTGCGGCGCACGCTATGGGCGGTGCCGACGATCCTCGCCGTCGTCACGGTCTGCTATCTGCTGCT
GCATTTCACGCCCGGCGGGCCGTTCGACAGCGAGAAGCAGCTGTCCGCCGCGACGCTCGCGAACCTGAACGCGAAGTACC
ACCTCGACGAGCCGCTGTGGAAGCAGTACCTGCTGTATCTCGGCTCGCTGCTGCACGGCGATCTCGGCCCCTCGTTCCGC
TATACGGACTGGTCCGTGAACGATCTGGTGCGCAAGGCGTTTCCGGTGAGTCTGGGCGTCGGCGGCGTGTCGATTCCGCT
GTCTATCGTGCTCGGCGTGCTGCTTGGCACGCTCGCCGCGGTGCGCCGCGACAGCTTCGTCGACCGCTTCGTGATGCTGA
TCGGCAACTTCGGCAATGTGATTCCGCCGTTCGTGCTCGGCCCGGTGCTCGTGCTGATCTTCGCGATCGGGCTGAAGACG
TCCGAGGGCGCGGGCTGGCTGCCCGCGGGCGGCTGGGGCGACGGCGGCTGGCGCTACCGTGTGCTGCCCGTCACGCTGCT
CACGCTGATCAACGTGTCGCTGCTCGCGCGCGTGATGCGCGGCTCGATGATCGAGACGCTGTCGAGCAACTACATCCGCA
CCGCGCGCGCGAAGGGGCTGCCCGGCCGCACGATCGTGCTGCGCCATGCGCTCAAGCCCGCGCTGATGCCCGTCGTGTCG
CTGTTCGGCACGGTATGCATCTCGTCGATCACCGCGGCCGTCGTGACGGAATCGGTGTTCGCGCTGCCGGGCCTCGGCCA
GCTCGTCGTCAACGGCGCGATCAATCGCGACTACACGCTCGTGCTCGGTCTCGTCGTGCTGACGACCGTCTGCGCGGTGC
TGTTCAACCTGCTGGTCGATCTCGCGTACGCGTGGCTCGATCCGCGCATCCGCTATTGA

Upstream 100 bases:

>100_bases
TGAAGTCGTACGTCGGCGGCTACACGCTGACGAACTACATCGACATGCGCGCCTCGCAGGACATGTACCTGATCAAGCAC
TGACTGGAGCGGAGCCGATC

Downstream 100 bases:

>100_bases
GGGGCGACGCGATGACGCCTGTTACCTCTTCGATCGAGCTGCCGACGGCGGCCGACGCGCCGCCGCGCTCGCGCACGCCG
CTCGGGCTTGCCGCGCGGCG

Product: oligopeptide transport system permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPLWKQYLLYLGSLLHGDLGPSFR
YTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAAVRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKT
SEGAGWLPAGGWGDGGWRYRVLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVDLAYAWLDPRIRY

Sequences:

>Translated_312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPLWKQYLLYLGSLLHGDLGPSFR
YTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAAVRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKT
SEGAGWLPAGGWGDGGWRYRVLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVDLAYAWLDPRIRY
>Mature_312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPLWKQYLLYLGSLLHGDLGPSFR
YTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAAVRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKT
SEGAGWLPAGGWGDGGWRYRVLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVDLAYAWLDPRIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=312, Percent_Identity=49.6794871794872, Blast_Score=320, Evalue=8e-89,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=32.2485207100592, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=33.1210191082803, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=33.2278481012658, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=34.6504559270517, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788504, Length=373, Percent_Identity=25.4691689008043, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787550, Length=337, Percent_Identity=25.8160237388724, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33774; Mature: 33774

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH
KQYLLYLGSLLHGDLGPSFRYTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH
VRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKTSEGAGWLPAGGWGDGGWRYR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
VLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAYAWLDPRIRY
HHHHHCCCCCCC
>Mature Secondary Structure
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDSEKQLSAATLANLNAKYHLDEPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH
KQYLLYLGSLLHGDLGPSFRYTDWSVNDLVRKAFPVSLGVGGVSIPLSIVLGVLLGTLAA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH
VRRDSFVDRFVMLIGNFGNVIPPFVLGPVLVLIFAIGLKTSEGAGWLPAGGWGDGGWRYR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
VLPVTLLTLINVSLLARVMRGSMIETLSSNYIRTARAKGLPGRTIVLRHALKPALMPVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LFGTVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLVD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAYAWLDPRIRY
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]