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The map label for this gene is 53723121

Identifier: 53723121

GI number: 53723121

Start: 2853944

End: 2854462

Strand: Reverse

Name: 53723121

Synonym: BPSS2107

Alternate gene names: NA

Gene position: 2854462-2853944 (Counterclockwise)

Preceding gene: 53723124

Following gene: 53723120

Centisome position: 89.96

GC content: 65.9

Gene sequence:

>519_bases
ATGCGACCGCGGTTCAGTGTTTCCGTCGTTCTGGGATGCGCGCTGCTGCTCGCCGGATGCGGGGCGACCGAGCGTTCCGT
TGCGGTGCCGTATTCGATCACGCTCGACGTCGCGCCCGACGTCAATCCGGACCTCAATCGCAAGCCGTCGCCGATCGTGC
TGAAGGTGTTCCAGCTGAAGACGGCGTCCGCGTTCGAAAGCGCCGATTTCTTCTCGCTGCAGGACAAGCCGCAGAGCGTG
CTCGGCGCGGATCTGCTCGGCGTCGACCGGATCATCCTGCGCCCGGGGGATGCGCGCACGCTGCACTATCGCGGCAACGT
CGACGCGGGCGCGATCGGCATCGTCGCCGAATATCGCGTGCTCGAGAAGAACCGCTGGCGGATGACGGTGCCGCTGCCGC
GCGCGAAGCAACTGAACCTGTACCGATTCTGGCAAACCTCGCCGGGCGAGATGAAGCTGCAGGTCGCCGTGAAGAACGGC
GGCATCGGCCTCGGCGGCGATTCGCGAGTACGCCAATGA

Upstream 100 bases:

>100_bases
AATAGCCCCAATAGATCGTCACCTTATTTTAAATAGATCCGGCTTGTCGCTGCGGGAAGCCGGCGGGCATTTTATTGCGA
TGCAAGGAAAGAGACCGAAA

Downstream 100 bases:

>100_bases
ACGAGCCGGTATTGTCCGCGACCCCCGCTGCGGCGTTGCGCCAGCGCGTGATCTGGACCGAGGGCATGTTCCTGCGGCCG
CAGCATTTCCAGCAGCTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Lipoprotein; Type VI Secretion Lipoprotein/VasD; SciN Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein VasD; Outer Membrane Lipoprotein; Type VI Secretion System Core Protein; Type VI Secretion Protein VasD

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRPRFSVSVVLGCALLLAGCGATERSVAVPYSITLDVAPDVNPDLNRKPSPIVLKVFQLKTASAFESADFFSLQDKPQSV
LGADLLGVDRIILRPGDARTLHYRGNVDAGAIGIVAEYRVLEKNRWRMTVPLPRAKQLNLYRFWQTSPGEMKLQVAVKNG
GIGLGGDSRVRQ

Sequences:

>Translated_172_residues
MRPRFSVSVVLGCALLLAGCGATERSVAVPYSITLDVAPDVNPDLNRKPSPIVLKVFQLKTASAFESADFFSLQDKPQSV
LGADLLGVDRIILRPGDARTLHYRGNVDAGAIGIVAEYRVLEKNRWRMTVPLPRAKQLNLYRFWQTSPGEMKLQVAVKNG
GIGLGGDSRVRQ
>Mature_172_residues
MRPRFSVSVVLGCALLLAGCGATERSVAVPYSITLDVAPDVNPDLNRKPSPIVLKVFQLKTASAFESADFFSLQDKPQSV
LGADLLGVDRIILRPGDARTLHYRGNVDAGAIGIVAEYRVLEKNRWRMTVPLPRAKQLNLYRFWQTSPGEMKLQVAVKNG
GIGLGGDSRVRQ

Specific function: Unknown

COG id: COG3521

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18804; Mature: 18804

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPRFSVSVVLGCALLLAGCGATERSVAVPYSITLDVAPDVNPDLNRKPSPIVLKVFQLK
CCCCCHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCCEEEEEEEEE
TASAFESADFFSLQDKPQSVLGADLLGVDRIILRPGDARTLHYRGNVDAGAIGIVAEYRV
CCCCCCCCCEEEECCCCHHHHCCHHCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEEEE
LEKNRWRMTVPLPRAKQLNLYRFWQTSPGEMKLQVAVKNGGIGLGGDSRVRQ
ECCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEECCCEECCCCCCCCC
>Mature Secondary Structure
MRPRFSVSVVLGCALLLAGCGATERSVAVPYSITLDVAPDVNPDLNRKPSPIVLKVFQLK
CCCCCHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCCEEEEEEEEE
TASAFESADFFSLQDKPQSVLGADLLGVDRIILRPGDARTLHYRGNVDAGAIGIVAEYRV
CCCCCCCCCEEEECCCCHHHHCCHHCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEEEE
LEKNRWRMTVPLPRAKQLNLYRFWQTSPGEMKLQVAVKNGGIGLGGDSRVRQ
ECCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEECCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA