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The map label for this gene is lsrC [H]

Identifier: 53723088

GI number: 53723088

Start: 2805239

End: 2806207

Strand: Reverse

Name: lsrC [H]

Synonym: BPSS2070

Alternate gene names: 53723088

Gene position: 2806207-2805239 (Counterclockwise)

Preceding gene: 53723089

Following gene: 53723087

Centisome position: 88.44

GC content: 59.65

Gene sequence:

>969_bases
ATGGAACGCTTACTCAAAATCTATCTATCGAAGCCAGAGTTCGCAGGCGGGTTGATGTTGATTCTCCTGGCGATGCTCCT
GCAAGGCACGAGTGGTGGCGTGTTCTTGTCTGGCGGCAATGTCGGCACTGTCATGGGGATCGTGCCGGAGGTCGGCTTGG
TGGCGGTTGGTGTCGCCATCCTGATGATCGCAGGCGAATTCGACCTCTCGGTCGGTTCTGTGTTCGCCTTCGGCCCCATG
GTCGCATGTGTGCTGGCAGCAAGGGGCTGGCCGATGGCCATCTCGATGCCCGCCGCGTTGCTATGCTGTGCCGCTGTCGG
CTTCCTCAACGGCAAGTTGACGCTTCGCTTTCACATTCCTTCGTTCATCACGACGTTGGGCATGCTGTTCATCGTGCGTA
GCCTGACTATCGTGATTTCAGGAGGATTCCCGCCCCCATTCCCGGATGACGCGCCGGTCTGGTTGTTCACCGACACCATC
GGACCTGTCAGGTTGTCCATGTTCTGGTTTCTTGGCCTGTGCGTGATCCTCGCGCTGGTGCTGAGTGTATCGAACTACGG
TAACTGGATCCGGGCGACCGGCGGTATGCCGGAAGCGGCGCAGTCCATCGGCATTCGTACCGACCGCGTGAAGCTCGGTT
GTTTTGTGCTGTGCTCTGTGTTGGCAGGCTTTGCCGGCATGCTGCAGGTCATGCGATTGGCCTCCCCTCTGCCCTCGCTC
GGCGATGGCTTGGAGCTTCAAGCCGTCGCTGCGGCGGTAATCGGAGGCACAGCCCTCGGAGGCGGCATTGGAACCGTACT
CGGTGCGGTCATCGGTGTCGTTCTTATCCGCGCGATCGACAATGGCATGGTCGTCTCGGGCGTCGATGCCAACTGGTTCA
AATTTGCGATCGGTGCACTGACCGTCGCCGCGGTGATCGCCAACAGCCATCTGCGCAACGTTGCCAAGAAGATGAAGGTC
GAAGCATGA

Upstream 100 bases:

>100_bases
ACGTGGAAACTGGCAAAGGCCTGTTGCTGCCTGAACAGGTCGACGGCGTGATCGAGTTGTCGAAGAAGGGCTATCGCTGA
GTACTCACGGTGACACAAAC

Downstream 100 bases:

>100_bases
ACAGTATCCAATTGAAGGCAACCGACGGTTCCATTCCGTCTGCCCGTGCTGAGTCCCAAGGCCAGAACCTCGGCCCGGTC
GCCGACAAAACGGTTGCAAG

Product: branched-chain amino acid transport system permease

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MERLLKIYLSKPEFAGGLMLILLAMLLQGTSGGVFLSGGNVGTVMGIVPEVGLVAVGVAILMIAGEFDLSVGSVFAFGPM
VACVLAARGWPMAISMPAALLCCAAVGFLNGKLTLRFHIPSFITTLGMLFIVRSLTIVISGGFPPPFPDDAPVWLFTDTI
GPVRLSMFWFLGLCVILALVLSVSNYGNWIRATGGMPEAAQSIGIRTDRVKLGCFVLCSVLAGFAGMLQVMRLASPLPSL
GDGLELQAVAAAVIGGTALGGGIGTVLGAVIGVVLIRAIDNGMVVSGVDANWFKFAIGALTVAAVIANSHLRNVAKKMKV
EA

Sequences:

>Translated_322_residues
MERLLKIYLSKPEFAGGLMLILLAMLLQGTSGGVFLSGGNVGTVMGIVPEVGLVAVGVAILMIAGEFDLSVGSVFAFGPM
VACVLAARGWPMAISMPAALLCCAAVGFLNGKLTLRFHIPSFITTLGMLFIVRSLTIVISGGFPPPFPDDAPVWLFTDTI
GPVRLSMFWFLGLCVILALVLSVSNYGNWIRATGGMPEAAQSIGIRTDRVKLGCFVLCSVLAGFAGMLQVMRLASPLPSL
GDGLELQAVAAAVIGGTALGGGIGTVLGAVIGVVLIRAIDNGMVVSGVDANWFKFAIGALTVAAVIANSHLRNVAKKMKV
EA
>Mature_322_residues
MERLLKIYLSKPEFAGGLMLILLAMLLQGTSGGVFLSGGNVGTVMGIVPEVGLVAVGVAILMIAGEFDLSVGSVFAFGPM
VACVLAARGWPMAISMPAALLCCAAVGFLNGKLTLRFHIPSFITTLGMLFIVRSLTIVISGGFPPPFPDDAPVWLFTDTI
GPVRLSMFWFLGLCVILALVLSVSNYGNWIRATGGMPEAAQSIGIRTDRVKLGCFVLCSVLAGFAGMLQVMRLASPLPSL
GDGLELQAVAAAVIGGTALGGGIGTVLGAVIGVVLIRAIDNGMVVSGVDANWFKFAIGALTVAAVIANSHLRNVAKKMKV
EA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=286, Percent_Identity=32.5174825174825, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790191, Length=272, Percent_Identity=29.7794117647059, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082395, Length=262, Percent_Identity=32.824427480916, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI145693152, Length=271, Percent_Identity=30.6273062730627, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787793, Length=266, Percent_Identity=29.3233082706767, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789992, Length=128, Percent_Identity=39.84375, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790524, Length=277, Percent_Identity=30.6859205776173, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=323, Percent_Identity=31.8885448916409, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787794, Length=287, Percent_Identity=25.7839721254355, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33281; Mature: 33281

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLLKIYLSKPEFAGGLMLILLAMLLQGTSGGVFLSGGNVGTVMGIVPEVGLVAVGVAI
CCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LMIAGEFDLSVGSVFAFGPMVACVLAARGWPMAISMPAALLCCAAVGFLNGKLTLRFHIP
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCEEEEEEECH
SFITTLGMLFIVRSLTIVISGGFPPPFPDDAPVWLFTDTIGPVRLSMFWFLGLCVILALV
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
LSVSNYGNWIRATGGMPEAAQSIGIRTDRVKLGCFVLCSVLAGFAGMLQVMRLASPLPSL
HHHHCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GDGLELQAVAAAVIGGTALGGGIGTVLGAVIGVVLIRAIDNGMVVSGVDANWFKFAIGAL
CCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
TVAAVIANSHLRNVAKKMKVEA
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MERLLKIYLSKPEFAGGLMLILLAMLLQGTSGGVFLSGGNVGTVMGIVPEVGLVAVGVAI
CCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LMIAGEFDLSVGSVFAFGPMVACVLAARGWPMAISMPAALLCCAAVGFLNGKLTLRFHIP
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCEEEEEEECH
SFITTLGMLFIVRSLTIVISGGFPPPFPDDAPVWLFTDTIGPVRLSMFWFLGLCVILALV
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
LSVSNYGNWIRATGGMPEAAQSIGIRTDRVKLGCFVLCSVLAGFAGMLQVMRLASPLPSL
HHHHCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GDGLELQAVAAAVIGGTALGGGIGTVLGAVIGVVLIRAIDNGMVVSGVDANWFKFAIGAL
CCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
TVAAVIANSHLRNVAKKMKVEA
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]