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The map label for this gene is atpD

Identifier: 53722974

GI number: 53722974

Start: 2638096

End: 2639631

Strand: Reverse

Name: atpD

Synonym: BPSS1953

Alternate gene names: 53722974

Gene position: 2639631-2638096 (Counterclockwise)

Preceding gene: 53722978

Following gene: 53722973

Centisome position: 83.19

GC content: 73.89

Gene sequence:

>1536_bases
GTGGGCGATGCGCGTGACGAGGGCGCCGGCCGCGTCGTCGCGGTGCGCGGCGCGGTGGTCGACGTCGCGTTCGACGGCGG
CGCGCTGCCCGCGCTGAACGAAGCGCTCACGATCCCGGTCGACGGCGCCTCGCCGATTCTCGCCGAGGTGCACGCACACC
TGAGCGACGCGGCGGTGCGCGCGCTCGCGCTCGGCCCGACGGGCGGCCTGCGGCGCGGCGCCGCCGTGCGCGCGACGGGC
GGGCCGATTCGCGTGCCCGTCGGCGACGCGGTGCTCGGCCGCCTGCTGAGCGTGACGGGCGCGCCCGGCGACGACGGCGC
GGCGCTTGCGGCGGACGTCGAGCGGCGGCCGATCCATCGCGGCGCGCCGCCGCTCGCCGAGCAGAAGAGCGCGAACGCGC
TGTTCGCGACCGGCATCAAGGTGATCGATCTGCTCGCGCCGCTCGCGCAGGGCGGCAAGGCCGCGATGTTCGGCGGCGCG
GGCGTGGGCAAGACGGTGCTCGTGATGGAGTTGATCCATGCGATGGTCGAGCGCTATCGCGGGATCTCGGTGTTCGCGGG
CATCGGCGAGCGCTCGCGCGAGGGGCACGAGATGCTGCTCGACATGCGCGGCTCCGGCGTGCTCGGCCGCACAGTGCTCG
TCTACGGGCAGATGAACGAGCCGCCCGGCGCGCGCTGGCGCGTGCCGCTCACCGCGCTCGCGATCGCCGAGTATTTTCGC
GACGAGCGCGCGCAGAACGTGCTGCTGCTGATGGACAACGTGTTTCGCTTCGTGCAGGCGGGCGCCGAGGTGTCGGGCCT
GCTCGGGCGGCTGCCGTCGCGGGTCGGCTACCAGCCGACGCTCGCGAGCGAGGTCGCGGCGCTGCAGGAGCGGATCGCCT
CGGTCGAGGGCGCGGCGGTGACCGCGATCGAGGCCGTCTACGTGCCCGCCGACGATTTCACCGATCCCGCCGTCACCGCG
ATCGCCGCGCACGTCGACAGCATGGTCGTGCTGTCGCGCGCGATGGCGGCCGAAGGAATGTATCCGGCGATCGATCCGGT
CGCGTCGTCGTCGATCCTGCTCGATCCGCTCGTCGTCGGCGAAGCGCACGTGGAGGTGGCCATCGAGGTGCGCCGCGTGA
TCGAGCATTACCGCGAATTGCAGGACGTGATCGCGTTGCTCGGCATCGATGAGCTCGGCGCGGACGACCGGCGGCTCGTC
GGCCGCGCGCGCCGGCTGCAGCGCTTTCTCACGCAGCCGTTCGCGGTGACCGAGGCGTTCACGGGGCAGGCGGGCGCGTC
GGTCGAGATCGCCGACACGATCGCCGGTTGCCGCGCGATCCTGCGCGGCGACTGCGACGACTGGCGCGAGAGTTCGCTGT
ACATGGTCGGCACGCTCGACGACGCGCGGCGCAAGGAAGCGGCGGCGCGCGAAGCGGACGCGCGCCGCGAGGCGGCTGCC
GCGGCGTCGGTCGCGGGACCGGGCACGACATCGGGCACGACATCCGACCCCGCATCCGGCTCCGCCGAGCCGCAAGGCGC
GCGGCATGGGCGCTGA

Upstream 100 bases:

>100_bases
CAGCCAGACGGGAGCGACGGTGGCGGATCCGCAGGCGACGAACGGCACGGGCGCGGCGTGCGCGGAGCGCGACGCGAGCG
ACGTGGGCGATGTGAGCGAC

Downstream 100 bases:

>100_bases
GCTGCGCGTGACGATCGCGACGCCGGCGCGCGTGTGCGTCGACGATCTGCCGATCGTGTCGCTGCGCGCCGAGGACGCGA
GCGGCGCGTTCGGCATCCGC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 2; F-ATPase subunit beta 2 [H]

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGASPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATG
GPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGA
GVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFR
DERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTA
IAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLV
GRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAA
AASVAGPGTTSGTTSDPASGSAEPQGARHGR

Sequences:

>Translated_511_residues
MGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGASPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATG
GPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGA
GVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFR
DERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTA
IAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLV
GRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAA
AASVAGPGTTSGTTSDPASGSAEPQGARHGR
>Mature_510_residues
GDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGASPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGG
PIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAG
VGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRD
ERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAI
AAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVG
RARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAA
ASVAGPGTTSGTTSDPASGSAEPQGARHGR

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=463, Percent_Identity=50.5399568034557, Blast_Score=465, Evalue=1e-131,
Organism=Homo sapiens, GI19913424, Length=317, Percent_Identity=27.7602523659306, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI19913426, Length=380, Percent_Identity=23.6842105263158, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI19913428, Length=390, Percent_Identity=23.8461538461538, Blast_Score=100, Evalue=6e-21,
Organism=Homo sapiens, GI50345984, Length=364, Percent_Identity=24.7252747252747, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI4757810, Length=364, Percent_Identity=24.7252747252747, Blast_Score=92, Evalue=9e-19,
Organism=Escherichia coli, GI1790170, Length=457, Percent_Identity=50.54704595186, Blast_Score=458, Evalue=1e-130,
Organism=Escherichia coli, GI1788251, Length=314, Percent_Identity=30.5732484076433, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1790172, Length=348, Percent_Identity=26.7241379310345, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=50.6437768240343, Blast_Score=465, Evalue=1e-131,
Organism=Caenorhabditis elegans, GI17565854, Length=317, Percent_Identity=29.3375394321767, Blast_Score=116, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=424, Percent_Identity=23.8207547169811, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=404, Percent_Identity=23.2673267326733, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=354, Percent_Identity=25.7062146892655, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71988080, Length=354, Percent_Identity=25.7062146892655, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=319, Percent_Identity=23.8244514106583, Blast_Score=76, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=51.7467248908297, Blast_Score=473, Evalue=1e-134,
Organism=Saccharomyces cerevisiae, GI6319603, Length=351, Percent_Identity=25.3561253561254, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=25.5434782608696, Blast_Score=91, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320016, Length=261, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24638766, Length=471, Percent_Identity=50.5307855626327, Blast_Score=466, Evalue=1e-131,
Organism=Drosophila melanogaster, GI28574560, Length=505, Percent_Identity=48.3168316831683, Blast_Score=444, Evalue=1e-125,
Organism=Drosophila melanogaster, GI24583988, Length=317, Percent_Identity=29.0220820189274, Blast_Score=113, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583986, Length=317, Percent_Identity=29.0220820189274, Blast_Score=113, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583984, Length=317, Percent_Identity=29.0220820189274, Blast_Score=113, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583992, Length=319, Percent_Identity=28.8401253918495, Blast_Score=113, Evalue=4e-25,
Organism=Drosophila melanogaster, GI20129479, Length=317, Percent_Identity=27.7602523659306, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24658560, Length=381, Percent_Identity=25.9842519685039, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI281361666, Length=382, Percent_Identity=23.8219895287958, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24646341, Length=382, Percent_Identity=23.8219895287958, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17136796, Length=382, Percent_Identity=23.8219895287958, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=48.9130434782609, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 53132; Mature: 53001

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGASPILAEVHAHLSDAAVR
CCCCCCCCCCCEEEEECEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
ALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHR
HEEECCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCC
GAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC
GISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFR
CCEEEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEECHHHHHHHHHHHH
DERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAV
HHHHCHHHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHCCCCCE
TAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVG
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEC
EAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAF
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
TGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAA
CCCCCCCEEHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
AASVAGPGTTSGTTSDPASGSAEPQGARHGR
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGASPILAEVHAHLSDAAVR
CCCCCCCCCCEEEEECEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
ALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHR
HEEECCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCC
GAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC
GISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFR
CCEEEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEECHHHHHHHHHHHH
DERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAV
HHHHCHHHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHCCCCCE
TAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVG
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEC
EAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAF
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
TGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAA
CCCCCCCEEHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
AASVAGPGTTSGTTSDPASGSAEPQGARHGR
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA