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The map label for this gene is rfbE [H]

Identifier: 53722705

GI number: 53722705

Start: 2316694

End: 2318160

Strand: Reverse

Name: rfbE [H]

Synonym: BPSS1685

Alternate gene names: 53722705

Gene position: 2318160-2316694 (Counterclockwise)

Preceding gene: 53722706

Following gene: 53722704

Centisome position: 73.06

GC content: 68.1

Gene sequence:

>1467_bases
ATGGATAAAGGCATGCTGAAGAACGTCGCGATCAATTTCTTCGGATTGGTCCTGCCGACCTTCGTCTCGCTCGTGACGGT
GCCCGCGTACATCAAGGCGCTCGGCGTCGAGCGCTACGGCGTCGTGAGCCTCGTGTGGACGCTGATCGGCTATTTCGGGA
TCCTCGATCTCGGGATGAGCATGGCCGCGCAGAACCACATCTCGAAGGCGCTCGCGAGCGGCGACGCGAAAGAGAGCGCG
CGCGTGTTCTGGAGCGCGTTCTGGCTGAACCTCGCCACGGGCATCGCGGGCGGGCTGCTGATCTACTTCGGCGCGTTCAT
GTACACCGCGTACTTCACGAAGGTGTCGGCCGAGCTGCAGCACGAGGTGTACCTCGCGCTGCCGTGGCTCGCGCTCGCGA
TTCCGCTCGCGAACGTGTCGTGGGTGTTCGCGGGCGCGATCAACGGCGCCGAGCGTTTCGGCGTGTTCAACACGAACCAG
ACGATCGGCACGTTCCTGTTCCAGCTGATGCCGCTCTTCGCCGCGTGGCTCGTCGCGCCGACGCTGCAGGTCGTGCTCGC
GGCGGCGGTGGGCGCGCGCTTCATCGCCGCGGTGATGCTCGGCGCGGCCAGCATGAAGGTGCTCGGCATCCGCAGGATCG
CGCCGCCGCAGCTCGGCACCGCGAAGGGGCTCTTCAGCTTCGGCGGCTGGATGCTGATCGCGAGCACGACGGGCATGATC
GCCGACACGCTCGACCGCGTGATGCTCGGCGCGGGGCTCGGCGCGAAGTACGTCACGTACTACACGGTGCCGCAGAACCT
CGTCACGCGGCTGAACATGCTGCCGAACGCGCTCGTGCGCACCCTGTTTCCGCGGCTGTCGGCGCTCGGGCGCGATCACG
CGGACACGCTCGTCAAGCAATCGCTCGAATTCCTGAACGGCGTGTTCACGCCGATCGCGATCGCCGCGATCTTCGCGCTC
GGGCCGTTTCTCGCGCTGTGGGTCGGCCGGGATCTCGCCGAGCTGTCGGCGCCCGTCGGCCGCGTGCTCGTGATCAGCGT
ATGGCTCGTCGGCCAGGCGAGCGTCACGCGCATTCTCATTCAGTCGCAAGTGAATCCGGCGCGCGCGGCGGCCGCGGGCC
TCGTGCAGATGCCGTTCTTCGTCGGCGCGCTGTGGTTCGGCATCCATCATTTCGGGCTGATCGGCGCGGCCGTCGTCGTG
GCGGCGCGCGCGCTCGTCGATTACGGCGTGCTGCTGTATCTGTCCGCGATCCGGATGCGCGCGATCGTGCTCGACATGGT
CGCGCACCTCGCGTTCCTGCTCGCGAGCCTGTACGTCGCGCACGCGCTGCCGGGCCTCGCCGCCGCGATCGCCGCGTGCG
CGGCCGCGCTCGCGCTGAACGTCGGCTGGTCGATCACGATGACGCCCGGCATGCGCGCGCTCGCGCGCAGCGCGCTCATG
CGTCTGAACCCGAGGAAGAGCGTATGA

Upstream 100 bases:

>100_bases
CGAGGAGGACGCGCGCGGCAAGGTGATGATGTATCGATGGAGGCCGCAATGATCGGGGCGGGAGCGGCGGCGATGGCGAA
CGCGGCGGGGCGGCGCGTCC

Downstream 100 bases:

>100_bases
ATCGCGATCTTGCAGAACATCCGTTGCAGCGCGCCGCGACGTTTCAGGACGTCGAGCGCGCCGCGCGCGACGCGCGCAGC
GCCGATGCGCCGCCGCCCGC

Product: lipopolysaccharide biosynthesis related membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MDKGMLKNVAINFFGLVLPTFVSLVTVPAYIKALGVERYGVVSLVWTLIGYFGILDLGMSMAAQNHISKALASGDAKESA
RVFWSAFWLNLATGIAGGLLIYFGAFMYTAYFTKVSAELQHEVYLALPWLALAIPLANVSWVFAGAINGAERFGVFNTNQ
TIGTFLFQLMPLFAAWLVAPTLQVVLAAAVGARFIAAVMLGAASMKVLGIRRIAPPQLGTAKGLFSFGGWMLIASTTGMI
ADTLDRVMLGAGLGAKYVTYYTVPQNLVTRLNMLPNALVRTLFPRLSALGRDHADTLVKQSLEFLNGVFTPIAIAAIFAL
GPFLALWVGRDLAELSAPVGRVLVISVWLVGQASVTRILIQSQVNPARAAAAGLVQMPFFVGALWFGIHHFGLIGAAVVV
AARALVDYGVLLYLSAIRMRAIVLDMVAHLAFLLASLYVAHALPGLAAAIAACAAALALNVGWSITMTPGMRALARSALM
RLNPRKSV

Sequences:

>Translated_488_residues
MDKGMLKNVAINFFGLVLPTFVSLVTVPAYIKALGVERYGVVSLVWTLIGYFGILDLGMSMAAQNHISKALASGDAKESA
RVFWSAFWLNLATGIAGGLLIYFGAFMYTAYFTKVSAELQHEVYLALPWLALAIPLANVSWVFAGAINGAERFGVFNTNQ
TIGTFLFQLMPLFAAWLVAPTLQVVLAAAVGARFIAAVMLGAASMKVLGIRRIAPPQLGTAKGLFSFGGWMLIASTTGMI
ADTLDRVMLGAGLGAKYVTYYTVPQNLVTRLNMLPNALVRTLFPRLSALGRDHADTLVKQSLEFLNGVFTPIAIAAIFAL
GPFLALWVGRDLAELSAPVGRVLVISVWLVGQASVTRILIQSQVNPARAAAAGLVQMPFFVGALWFGIHHFGLIGAAVVV
AARALVDYGVLLYLSAIRMRAIVLDMVAHLAFLLASLYVAHALPGLAAAIAACAAALALNVGWSITMTPGMRALARSALM
RLNPRKSV
>Mature_488_residues
MDKGMLKNVAINFFGLVLPTFVSLVTVPAYIKALGVERYGVVSLVWTLIGYFGILDLGMSMAAQNHISKALASGDAKESA
RVFWSAFWLNLATGIAGGLLIYFGAFMYTAYFTKVSAELQHEVYLALPWLALAIPLANVSWVFAGAINGAERFGVFNTNQ
TIGTFLFQLMPLFAAWLVAPTLQVVLAAAVGARFIAAVMLGAASMKVLGIRRIAPPQLGTAKGLFSFGGWMLIASTTGMI
ADTLDRVMLGAGLGAKYVTYYTVPQNLVTRLNMLPNALVRTLFPRLSALGRDHADTLVKQSLEFLNGVFTPIAIAAIFAL
GPFLALWVGRDLAELSAPVGRVLVISVWLVGQASVTRILIQSQVNPARAAAAGLVQMPFFVGALWFGIHHFGLIGAAVVV
AARALVDYGVLLYLSAIRMRAIVLDMVAHLAFLLASLYVAHALPGLAAAIAACAAALALNVGWSITMTPGMRALARSALM
RLNPRKSV

Specific function: Could be an O-antigen transporter [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 51988; Mature: 51988

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCC
>Mature Secondary Structure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HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]