| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is lpsE [H]
Identifier: 53722704
GI number: 53722704
Start: 2314235
End: 2316697
Strand: Reverse
Name: lpsE [H]
Synonym: BPSS1684
Alternate gene names: 53722704
Gene position: 2316697-2314235 (Counterclockwise)
Preceding gene: 53722705
Following gene: 53722702
Centisome position: 73.01
GC content: 70.73
Gene sequence:
>2463_bases ATGAATCGCGATCTTGCAGAACATCCGTTGCAGCGCGCCGCGACGTTTCAGGACGTCGAGCGCGCCGCGCGCGACGCGCG CAGCGCCGATGCGCCGCCGCCCGCGCATCGCGCGCGCGATGCGGCGCGGCCGCTGCGCGTGGCGATCGTGCACGACTGGC TCGTCACCTACGCGGGCGCCGAGCGCGTGCTCGAGCAGATCGTCGCGTGTTTTCCGGATGCGGATCTGTTCGGCCTCGTC GATTTCCTCGACGACCGCACGTTCCTGCGCGGCAAGCCGGTCACCACGTCGTTCATCCAGAGGCTGCCGTACGCGCGCAC GAAGTACCGCAGCTACCTGCCGCTGATGCCGCTCGCGATCGAGCAGCTCGACGTGTCCGGGTACGATCTCGTGATCTCGA GCAGCCACGCGGTCGCGAAGGGCATCCTGACCGGGCCCGACCAGGTGCATGTGAGCTACGTGCATTCGCCGATCCGCTAC GCGTGGGATCTCCAGCATCAGTACCTCGAGCAGTCGCAGTTGACGCGCGGCGTCAAATCGGCGCTCGCGCGGCTGATCCT GCATTACATCCGCAACTGGGACGTGCGCACGTCGAATTCGGTCGACCGCTTCGTCGCGAACTCGGCGTTCATCGCGCGGC GCATCCGCAAGGTCTATCAGCGCGACGCGGCGGTCGTGTTTCCGCCCGTCGACGTCGACGCGTTCGCGCTGTCGACGCGG AAGGAGGACTTCTATCTGACCGCCTCGCGGATGGTGCCGTACAAGAAGATCGATCTGATCGTCGACGCGTTCGCGCAGAT GCCCGGGCGCCGGCTCGTCGTGATCGGCGACGGGCCGGACATGCGCAAGATCCGCGCAAAGGCCGCGCCGAACGTCGAGA TCATGGGCTATCAGCCGTTCGCGGTGTTGCAGGACCGGATGCGCCGCGCCAAGGCGTTCGTGTTCGCCGCCGAGGAGGAT TTCGGGATCTCGGTCGTCGAGGCGCAGGCCTGCGGCACGCCCGTCATTGCGTTCGGCAAGGGCGGCGCGCTCGAGACGGT GCGCGACGCGGCATCGCACGAGCGGCCGACGGGCGTGTTCTTCGATGAGCAGAGCGTGCGGGCGATCGTCGCCGCGGTCG ACGATTTCGAGCGCGCGCCCGCGCGCTTCAAGCCGGAAGATTGCCGCGCGAACGCCGAGCGGTTTTCCGCCGCGCATTTC CGGCGGCGCTTCGTCGCGCAGATCGACGCGCTGCTGCCGAACGCGCAGGCGCGCGCGAAGCTCGCGGGCGCGATGCGGCC GGCCGGCCGCGCGTCGCTCGCGGCGAGCGGCCTGAGGGCGCTCGTGCTCGACCAGAGCGGCGTGCTGGGCGGCGCCGAGC TGTCGCTGCTCGAGATCATGAAGCACCTGCGCGAGTCGGCCGACGTCGTGCTGTTCGACGACGGGCCGTTTCGCGCGGCA CTGGACGACGCGGGCGTGCACGTGGACGTGGTCGGCCAGCGCGCGCTCGCGGGCGTGCACAAGCAGGGCGGCGTGTCGCT GCGCGCGGCGGGCAGCCTGCTCGCGCTCGTGCGCGAGGTCGCGCGGCGCGCGCGCGACGCCGACGTGATCTACGCGAACA CGCAGCGCGCGATGGTGGTCGGCGCGCTCGCGGGGCGGCTCGCGCGCAAGCCGGTGGTCTGGCATCTGCGCGACATCGTG AGCGACGCGCACTTCGGCCCGAAGCAGCGGCTCGCGATCAAGCAGTGCGCGCGGCTCGGCGTGACGCGCGTGATCGCGAA TTCGGACGCGTCCGCGCGCGCGTTTCTCGAATTGACGGGCTTCGAGCGGCGCGCGGTGCAGGTGGTCTTCAACGGCATCT CGGCCGAACCGTTCGTCGCGCTGGAACCGGTCCGCCCGGCCGCGCTGCGCGTGCGCTTCGGGCTGCCCGCCGATGCGTGG ATCGTCGGCTCGTTCAGTCGGCTCGCGCACTGGAAAGGGCAGCACGTGCTGCTCGAGGCGGCGCGGCTCTATCCGGACAT GCACGTCGCGCTCGTCGGCGCGCCGCTTTTCGGCGAGGACGAGTACGCGGCCGAGCTGCGCGGCTTCGTCGCGCTGCACG GGCTCGGCGAGCGCGTGCATTTCCTCGGCTTTCAGCGCGACGTCGCCGCCTGCATGAAGGCGGTCGACGTCGTCGCGCAC ACGTCGATCACGCCGGAGCCGTTCGGCCGCGTGATCGTCGAGGGGATGCTCGCGAAGCGGCCCGTCGTCGCGGCGCGCGC GGGCGGCGTCGTCGAGATCGTCGACGACGACGTGAACGGCCTGCTCTGCGAGCCCGGCGACGCGCATGCGCTTGCCGACG CGCTCGCCGCGCTGCGCACCGATGCGGTGCTTTGCGGGCGGCTCGTCGCGAACGGCTACGACACCGCGGTGAACCGGTTC GGCACGCAGATCTATGTCGAGCAGGTCGAGCGCATTCTCGTCGAGACCGCGCGGCGGCGGTGA
Upstream 100 bases:
>100_bases CCGCGCTCGCGCTGAACGTCGGCTGGTCGATCACGATGACGCCCGGCATGCGCGCGCTCGCGCGCAGCGCGCTCATGCGT CTGAACCCGAGGAAGAGCGT
Downstream 100 bases:
>100_bases AACCGGTTCGGCGGTGAGGCCGCGGCGGCGAGCGGCAGGCGCGCCGTCCGTGGGGTGCGCCCGAGCAGGGCGGCGGCGCG AGCGGCCGGTTCCGGCGCGC
Product: lipopolysaccharide biosynthesys-related glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MNRDLAEHPLQRAATFQDVERAARDARSADAPPPAHRARDAARPLRVAIVHDWLVTYAGAERVLEQIVACFPDADLFGLV DFLDDRTFLRGKPVTTSFIQRLPYARTKYRSYLPLMPLAIEQLDVSGYDLVISSSHAVAKGILTGPDQVHVSYVHSPIRY AWDLQHQYLEQSQLTRGVKSALARLILHYIRNWDVRTSNSVDRFVANSAFIARRIRKVYQRDAAVVFPPVDVDAFALSTR KEDFYLTASRMVPYKKIDLIVDAFAQMPGRRLVVIGDGPDMRKIRAKAAPNVEIMGYQPFAVLQDRMRRAKAFVFAAEED FGISVVEAQACGTPVIAFGKGGALETVRDAASHERPTGVFFDEQSVRAIVAAVDDFERAPARFKPEDCRANAERFSAAHF RRRFVAQIDALLPNAQARAKLAGAMRPAGRASLAASGLRALVLDQSGVLGGAELSLLEIMKHLRESADVVLFDDGPFRAA LDDAGVHVDVVGQRALAGVHKQGGVSLRAAGSLLALVREVARRARDADVIYANTQRAMVVGALAGRLARKPVVWHLRDIV SDAHFGPKQRLAIKQCARLGVTRVIANSDASARAFLELTGFERRAVQVVFNGISAEPFVALEPVRPAALRVRFGLPADAW IVGSFSRLAHWKGQHVLLEAARLYPDMHVALVGAPLFGEDEYAAELRGFVALHGLGERVHFLGFQRDVAACMKAVDVVAH TSITPEPFGRVIVEGMLAKRPVVAARAGGVVEIVDDDVNGLLCEPGDAHALADALAALRTDAVLCGRLVANGYDTAVNRF GTQIYVEQVERILVETARRR
Sequences:
>Translated_820_residues MNRDLAEHPLQRAATFQDVERAARDARSADAPPPAHRARDAARPLRVAIVHDWLVTYAGAERVLEQIVACFPDADLFGLV DFLDDRTFLRGKPVTTSFIQRLPYARTKYRSYLPLMPLAIEQLDVSGYDLVISSSHAVAKGILTGPDQVHVSYVHSPIRY AWDLQHQYLEQSQLTRGVKSALARLILHYIRNWDVRTSNSVDRFVANSAFIARRIRKVYQRDAAVVFPPVDVDAFALSTR KEDFYLTASRMVPYKKIDLIVDAFAQMPGRRLVVIGDGPDMRKIRAKAAPNVEIMGYQPFAVLQDRMRRAKAFVFAAEED FGISVVEAQACGTPVIAFGKGGALETVRDAASHERPTGVFFDEQSVRAIVAAVDDFERAPARFKPEDCRANAERFSAAHF RRRFVAQIDALLPNAQARAKLAGAMRPAGRASLAASGLRALVLDQSGVLGGAELSLLEIMKHLRESADVVLFDDGPFRAA LDDAGVHVDVVGQRALAGVHKQGGVSLRAAGSLLALVREVARRARDADVIYANTQRAMVVGALAGRLARKPVVWHLRDIV SDAHFGPKQRLAIKQCARLGVTRVIANSDASARAFLELTGFERRAVQVVFNGISAEPFVALEPVRPAALRVRFGLPADAW IVGSFSRLAHWKGQHVLLEAARLYPDMHVALVGAPLFGEDEYAAELRGFVALHGLGERVHFLGFQRDVAACMKAVDVVAH TSITPEPFGRVIVEGMLAKRPVVAARAGGVVEIVDDDVNGLLCEPGDAHALADALAALRTDAVLCGRLVANGYDTAVNRF GTQIYVEQVERILVETARRR >Mature_820_residues MNRDLAEHPLQRAATFQDVERAARDARSADAPPPAHRARDAARPLRVAIVHDWLVTYAGAERVLEQIVACFPDADLFGLV DFLDDRTFLRGKPVTTSFIQRLPYARTKYRSYLPLMPLAIEQLDVSGYDLVISSSHAVAKGILTGPDQVHVSYVHSPIRY AWDLQHQYLEQSQLTRGVKSALARLILHYIRNWDVRTSNSVDRFVANSAFIARRIRKVYQRDAAVVFPPVDVDAFALSTR KEDFYLTASRMVPYKKIDLIVDAFAQMPGRRLVVIGDGPDMRKIRAKAAPNVEIMGYQPFAVLQDRMRRAKAFVFAAEED FGISVVEAQACGTPVIAFGKGGALETVRDAASHERPTGVFFDEQSVRAIVAAVDDFERAPARFKPEDCRANAERFSAAHF RRRFVAQIDALLPNAQARAKLAGAMRPAGRASLAASGLRALVLDQSGVLGGAELSLLEIMKHLRESADVVLFDDGPFRAA LDDAGVHVDVVGQRALAGVHKQGGVSLRAAGSLLALVREVARRARDADVIYANTQRAMVVGALAGRLARKPVVWHLRDIV SDAHFGPKQRLAIKQCARLGVTRVIANSDASARAFLELTGFERRAVQVVFNGISAEPFVALEPVRPAALRVRFGLPADAW IVGSFSRLAHWKGQHVLLEAARLYPDMHVALVGAPLFGEDEYAAELRGFVALHGLGERVHFLGFQRDVAACMKAVDVVAH TSITPEPFGRVIVEGMLAKRPVVAARAGGVVEIVDDDVNGLLCEPGDAHALADALAALRTDAVLCGRLVANGYDTAVNRF GTQIYVEQVERILVETARRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: NA
Molecular weight: Translated: 89862; Mature: 89862
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRDLAEHPLQRAATFQDVERAARDARSADAPPPAHRARDAARPLRVAIVHDWLVTYAGA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHHHH ERVLEQIVACFPDADLFGLVDFLDDRTFLRGKPVTTSFIQRLPYARTKYRSYLPLMPLAI HHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHCCCHHHHHHHCCCCHHHHH EQLDVSGYDLVISSSHAVAKGILTGPDQVHVSYVHSPIRYAWDLQHQYLEQSQLTRGVKS HHHCCCCEEEEEECCHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH ALARLILHYIRNWDVRTSNSVDRFVANSAFIARRIRKVYQRDAAVVFPPVDVDAFALSTR HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHEECCC KEDFYLTASRMVPYKKIDLIVDAFAQMPGRRLVVIGDGPDMRKIRAKAAPNVEIMGYQPF CCCEEEEHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCCH AVLQDRMRRAKAFVFAAEEDFGISVVEAQACGTPVIAFGKGGALETVRDAASHERPTGVF HHHHHHHHHHHEEEEEECCCCCEEEEEHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCEE FDEQSVRAIVAAVDDFERAPARFKPEDCRANAERFSAAHFRRRFVAQIDALLPNAQARAK ECCHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LAGAMRPAGRASLAASGLRALVLDQSGVLGGAELSLLEIMKHLRESADVVLFDDGPFRAA HHHHCCCCCCHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEE LDDAGVHVDVVGQRALAGVHKQGGVSLRAAGSLLALVREVARRARDADVIYANTQRAMVV CCCCCCEEEEECHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHH GALAGRLARKPVVWHLRDIVSDAHFGPKQRLAIKQCARLGVTRVIANSDASARAFLELTG HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHEEECCCCCCEEEEEECC FERRAVQVVFNGISAEPFVALEPVRPAALRVRFGLPADAWIVGSFSRLAHWKGQHVLLEA CHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCCEEECCHHHHHHCCCCHHHHHH ARLYPDMHVALVGAPLFGEDEYAAELRGFVALHGLGERVHFLGFQRDVAACMKAVDVVAH HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHH TSITPEPFGRVIVEGMLAKRPVVAARAGGVVEIVDDDVNGLLCEPGDAHALADALAALRT CCCCCCHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHH DAVLCGRLVANGYDTAVNRFGTQIYVEQVERILVETARRR HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNRDLAEHPLQRAATFQDVERAARDARSADAPPPAHRARDAARPLRVAIVHDWLVTYAGA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHHHH ERVLEQIVACFPDADLFGLVDFLDDRTFLRGKPVTTSFIQRLPYARTKYRSYLPLMPLAI HHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHCCCHHHHHHHCCCCHHHHH EQLDVSGYDLVISSSHAVAKGILTGPDQVHVSYVHSPIRYAWDLQHQYLEQSQLTRGVKS HHHCCCCEEEEEECCHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH ALARLILHYIRNWDVRTSNSVDRFVANSAFIARRIRKVYQRDAAVVFPPVDVDAFALSTR HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHEECCC KEDFYLTASRMVPYKKIDLIVDAFAQMPGRRLVVIGDGPDMRKIRAKAAPNVEIMGYQPF CCCEEEEHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCCH AVLQDRMRRAKAFVFAAEEDFGISVVEAQACGTPVIAFGKGGALETVRDAASHERPTGVF HHHHHHHHHHHEEEEEECCCCCEEEEEHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCEE FDEQSVRAIVAAVDDFERAPARFKPEDCRANAERFSAAHFRRRFVAQIDALLPNAQARAK ECCHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LAGAMRPAGRASLAASGLRALVLDQSGVLGGAELSLLEIMKHLRESADVVLFDDGPFRAA HHHHCCCCCCHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEE LDDAGVHVDVVGQRALAGVHKQGGVSLRAAGSLLALVREVARRARDADVIYANTQRAMVV CCCCCCEEEEECHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHH GALAGRLARKPVVWHLRDIVSDAHFGPKQRLAIKQCARLGVTRVIANSDASARAFLELTG HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHEEECCCCCCEEEEEECC FERRAVQVVFNGISAEPFVALEPVRPAALRVRFGLPADAWIVGSFSRLAHWKGQHVLLEA CHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCCEEECCHHHHHHCCCCHHHHHH ARLYPDMHVALVGAPLFGEDEYAAELRGFVALHGLGERVHFLGFQRDVAACMKAVDVVAH HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHH TSITPEPFGRVIVEGMLAKRPVVAARAGGVVEIVDDDVNGLLCEPGDAHALADALAALRT CCCCCCHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHH DAVLCGRLVANGYDTAVNRFGTQIYVEQVERILVETARRR HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11157937; 11481430 [H]