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The map label for this gene is cph2 [H]

Identifier: 53722321

GI number: 53722321

Start: 1776176

End: 1777645

Strand: Reverse

Name: cph2 [H]

Synonym: BPSS1297

Alternate gene names: 53722321

Gene position: 1777645-1776176 (Counterclockwise)

Preceding gene: 53722323

Following gene: 53722320

Centisome position: 56.02

GC content: 70.27

Gene sequence:

>1470_bases
ATGCCGCTCGGCTATATGGTGATCGCCGGCGCGGTGGCGGTCGCGATCGTCATGATGTCCATCTGCGCGGCGATCCTGCG
CGACAGCCGCGACGACGCCTTCGAGCACGCGCAGCGCGCCGCGCGCAACACGCTGCAGATGATCGAGCGCGACGTCACGC
GCGGCTTTCGGCTGTACGACCGCACGCTCGCGCGCATCGCCGCGCAGTTCGGCGATCGCCGGATCGCGGCGCTGCCCGCC
GGTCTGCGCCGCGAGATCCTGTTCGATTCCGCGGCGGCCGCCAACGAGGCCGGCGTGATGTACGTGCTCGACGCGAGCGG
GCACGTGACGCTCGCGTCGACGCGCGGCCCGCTGCCGGCCGAGCGCTTCGCGTCGTACGATTTCTTCGCCGCGCAGCGCG
ATACGCCGGCGCTCGGCATGTATCTGAGCGGGCCGTACCGGATGTCGTCGCGCGACGGCGAGCCGTACGTCGCGTTGTCG
CGCCGCATTGAGCGCGCGGACGGCGCGTTTGCGGGCGTCGTCGTGCTCGCAGTGCGCATCGCGTATTTCCGGCAACTGCT
GGCGGCGGCGAATGTGGGCCCGCACGGCGCGCTCGTGCTGATGCACACGGACGGGCGCATCCTGATGCGGATTCCGTTCG
ACGAGAAATTCGTCGGCCTCGACCTGACCGGGACGAGCCTCTACTCGCGCATGCAGTTCGGCCGTTCCGGCGAGTTCTTC
GACGTCGAGCCGATCGATCACGTGAAGCGCTTCTATCTGTATCGCCGGCTCGACGACGTTCCGCTCGTCGTGCAGGTGGC
GATCGCCGACGACGACATCTATGCGACCTGGCGTCTGCGCGCGTGGCGCTTCGGCGTGCTGACGGGCGTGTTCGCGCTGA
TCTTCGTCGTGATGAGCGCGTACCTCGCGCATTCGCTGTGGCGCAAGTCGACGGCCGAGGCGGCGCTCGCGCGGCTCGCC
GGCACCGACAGCCTCACGGGCCTCTACAACCGGCGCGCGCTCGACGAGACGCTCGAGCGCGAATGGCGGCGCGCGGTGGG
CGGCGATCGTCCGCTCGCGATCCTGTTCGTCGACATCGATCACTTCAAGCGCTACAACGACACGTACGGCCATCAGGTCG
GCGACGAGGTGCTCGCGACGGTGTCGCGCTGCATCGCGCAGCAGGCGGCACGGCTCGGCGACGTCGTCGCGCGCTACGGC
GGCGAGGAATTCGTCGTCGTGCTGCCGGATACGCCGCGCGGCGGCGCGCTCGTCGTCGCCGAGCGCGTGCGGCTCGGCGT
GCGGATGCTCGGCATCGAGCACGAAGGCTCGGAGGTCGGGTTCGTGACGGTCAGCGTCGGCGTCGCGGTGTGGCATCCGG
ACGGCGCGTCCGCGCCGCATATCGCCGCGATCGTCGAGGCGGCCGATCAGGCGCTCTATCGGGCGAAGGCGGACGGGCGC
AATCGCGTCGTCGACCTCGGGCTCGGCTAA

Upstream 100 bases:

>100_bases
GCCGACGATGTTTTTCGTGGCGAAGCGCGTCGCGCTCATCTAGATAAGCATGAAATCGATACATGCCGGCTTGCGCGGAC
GGCGAGGACCGTCGCACCGG

Downstream 100 bases:

>100_bases
GGCGTGCGTGCGGCGTGGCGTGGCGCAACGGCTTCGGGGCGCTCGCACCCGAGGGCGTTACGCGATGCGGCGACGCCAGG
CGGCCGACGCGGGTCGGCCG

Product: regulatory protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYDRTLARIAAQFGDRRIAALPA
GLRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLSGPYRMSSRDGEPYVALS
RRIERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLTGTSLYSRMQFGRSGEFF
DVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSAYLAHSLWRKSTAEAALARLA
GTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYG
GEEFVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGR
NRVVDLGLG

Sequences:

>Translated_489_residues
MPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYDRTLARIAAQFGDRRIAALPA
GLRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLSGPYRMSSRDGEPYVALS
RRIERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLTGTSLYSRMQFGRSGEFF
DVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSAYLAHSLWRKSTAEAALARLA
GTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYG
GEEFVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGR
NRVVDLGLG
>Mature_488_residues
PLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYDRTLARIAAQFGDRRIAALPAG
LRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPAERFASYDFFAAQRDTPALGMYLSGPYRMSSRDGEPYVALSR
RIERADGAFAGVVVLAVRIAYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLTGTSLYSRMQFGRSGEFFD
VEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSAYLAHSLWRKSTAEAALARLAG
TDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGG
EEFVVVLPDTPRGGALVVAERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRN
RVVDLGLG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=40.4371584699454, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=40, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=37.5, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=38.6243386243386, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787802, Length=201, Percent_Identity=33.8308457711443, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788085, Length=192, Percent_Identity=32.8125, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=37.4269005847953, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=310, Percent_Identity=28.0645161290323, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=35.3293413173653, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081974, Length=227, Percent_Identity=26.8722466960352, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=34.3373493975904, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=32.5443786982249, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=31.3253012048193, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=195, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 53724; Mature: 53593

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTLARIAAQFGDRRIAALPAGLRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPA
HHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCH
ERFASYDFFAAQRDTPALGMYLSGPYRMSSRDGEPYVALSRRIERADGAFAGVVVLAVRI
HHHCCCCCEECCCCCCCEEEEECCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
AYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLTGTSLYSRMQFGRSGEFF
HHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCEEEEEECHHHHHHHHHCCCCCCEE
DVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSA
ECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
YLAHSLWRKSTAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDID
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHH
HFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVLPDTPRGGALVVA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE
ERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGR
HHHHHCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
NRVVDLGLG
CCEEEECCC
>Mature Secondary Structure 
PLGYMVIAGAVAVAIVMMSICAAILRDSRDDAFEHAQRAARNTLQMIERDVTRGFRLYD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTLARIAAQFGDRRIAALPAGLRREILFDSAAAANEAGVMYVLDASGHVTLASTRGPLPA
HHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCH
ERFASYDFFAAQRDTPALGMYLSGPYRMSSRDGEPYVALSRRIERADGAFAGVVVLAVRI
HHHCCCCCEECCCCCCCEEEEECCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
AYFRQLLAAANVGPHGALVLMHTDGRILMRIPFDEKFVGLDLTGTSLYSRMQFGRSGEFF
HHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCEEEEEECHHHHHHHHHCCCCCCEE
DVEPIDHVKRFYLYRRLDDVPLVVQVAIADDDIYATWRLRAWRFGVLTGVFALIFVVMSA
ECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
YLAHSLWRKSTAEAALARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDID
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHH
HFKRYNDTYGHQVGDEVLATVSRCIAQQAARLGDVVARYGGEEFVVVLPDTPRGGALVVA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE
ERVRLGVRMLGIEHEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGR
HHHHHCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
NRVVDLGLG
CCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]