| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is 53721837
Identifier: 53721837
GI number: 53721837
Start: 1086995
End: 1088428
Strand: Reverse
Name: 53721837
Synonym: BPSS0812
Alternate gene names: NA
Gene position: 1088428-1086995 (Counterclockwise)
Preceding gene: 53721842
Following gene: 53721836
Centisome position: 34.3
GC content: 65.41
Gene sequence:
>1434_bases ATGGCGACACGCCGCCGCCCCGACATAAGACAACTCGATTGCCTTGATTATTGGCGATTCATCATCGCCCGTCGATTTCC GGCGATATATCGAAACAGCATTCAATCGATCAAGCGACCCATGTTCGAATCGTTCAACAAGGACGTCGTCGATGCGTTTG CCAGAAACAAGCGCAGGCTGACGAAAAACGCGGCGAGCCGCCAGGTGCGGGCGCTGCTGGACGAAGTCGGCGCGTCGGCG TTCAAGCTGCTGCCCCATCCGTTTCTCTTTCCCGCCGACGAGTTCGAGATGCTGGCCCGGCGCGCGCGCGCGTTGCTGCG CGCGCAGAACAAAATCGTGCGGCATCTGTGCCGGCACCGCCCGCGGGCGGACCTGCTCGCGCAGTGCTCGCTGAACCCGG CGCTCGCGCGCTATGTCGACTGGGACGAACTCGAGGCGGGCCGCCGCCGGGTGGCCCGCGTCGACATCCTGCCGTTACCG GACGGCTATGCGGTGTGCGAGCTGAATTTCTCGGCCGCGGTGGGCGGCGCCGAGCTGTTCGACTGCCATCGCCGGTTCAT GCAGGCATCGGGTTGGCCCGCCTTCGAGCGCGGCGGCTCGCCGTATGCGAACCTGCGCGCGCTCTACGAGGACACGCTCC GATCGATGGAAATCGACCGGATCGTGCTGCTCGACTGGAGCTCGCACGCCGCCCGAGGCTATGCGACGCCCGAGCTCGCG CGTCGATATCTCGCGGGCATCGCGAACGGCATGCCGGTCGACGTCCACACCGAATTGACCTACCCGTCGAAGTGGCTGGG CAACGGCCGAGGCAAGGGCATCCTGATCCACCGGAATTTCGTCTACGACGACGTGACGGTGAACGCCGATCGCTTCGACG CCATTCACCGCAGCGGCGCGACGTTTTCGAACGGACTGGAAGCCGAGCTGCTGATGAGCAAGGCATGGCTTGCGCTGCTG TGCGACGCGCGCTTTCATCCGCTCCTCGACGAAGACGAGATCGCGGCGATCCGGAACCATGTGCCGCACACGTTTCGCCT CGACGAGGGCACGTTCGCCGAGGCGCTGGCTCACAAGGACGAATGGGTGTTCAAGCTGAACGTGTCCTACGGCGGCGTCG ACGTGCTGATCGGCAAGGATCATCCGGCCGACGCGCTGGCCGATCGGCTGCGCCGACAGGGCATCGCCAACTGGATTTGC CAGGCGTTCCGCGCGGTGCAGACGATTCGCCACCCTTTCGACGACACCTTCGTCGCCGCCGAGCACAAGCCCGTGCTGGG AATGTATCTGCACCGCGACGACGCGAGCGGCATGGCGCTGCGCTCGAACCGCTTTTCGAGCGTGGTGAATGCGGGCAGCG GGGCCGGCGTTCACTGGGCGGCCGTCGTCACCGAAGCGGAAAAAGCGGCGCTACTCGCCGCGATGGACGGCTGA
Upstream 100 bases:
>100_bases CGATGCGCGGCTCGACCACGCCGTCCGCGCGTGCCACGCGGCACCGCCCCCGTTTCGCCCCGCATCGAAGCCGCGCACGA ATCGTAAAAAATATGGCAGC
Downstream 100 bases:
>100_bases GGTCCGGCCACGCGCGCCGTCCCGCGCATGCGCCGCGCGGCGACGCGCTGCCTAGGATATCGAAGCATTCTTGGCGTATC GGATTTCAGGCGAAACAACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MATRRRPDIRQLDCLDYWRFIIARRFPAIYRNSIQSIKRPMFESFNKDVVDAFARNKRRLTKNAASRQVRALLDEVGASA FKLLPHPFLFPADEFEMLARRARALLRAQNKIVRHLCRHRPRADLLAQCSLNPALARYVDWDELEAGRRRVARVDILPLP DGYAVCELNFSAAVGGAELFDCHRRFMQASGWPAFERGGSPYANLRALYEDTLRSMEIDRIVLLDWSSHAARGYATPELA RRYLAGIANGMPVDVHTELTYPSKWLGNGRGKGILIHRNFVYDDVTVNADRFDAIHRSGATFSNGLEAELLMSKAWLALL CDARFHPLLDEDEIAAIRNHVPHTFRLDEGTFAEALAHKDEWVFKLNVSYGGVDVLIGKDHPADALADRLRRQGIANWIC QAFRAVQTIRHPFDDTFVAAEHKPVLGMYLHRDDASGMALRSNRFSSVVNAGSGAGVHWAAVVTEAEKAALLAAMDG
Sequences:
>Translated_477_residues MATRRRPDIRQLDCLDYWRFIIARRFPAIYRNSIQSIKRPMFESFNKDVVDAFARNKRRLTKNAASRQVRALLDEVGASA FKLLPHPFLFPADEFEMLARRARALLRAQNKIVRHLCRHRPRADLLAQCSLNPALARYVDWDELEAGRRRVARVDILPLP DGYAVCELNFSAAVGGAELFDCHRRFMQASGWPAFERGGSPYANLRALYEDTLRSMEIDRIVLLDWSSHAARGYATPELA RRYLAGIANGMPVDVHTELTYPSKWLGNGRGKGILIHRNFVYDDVTVNADRFDAIHRSGATFSNGLEAELLMSKAWLALL CDARFHPLLDEDEIAAIRNHVPHTFRLDEGTFAEALAHKDEWVFKLNVSYGGVDVLIGKDHPADALADRLRRQGIANWIC QAFRAVQTIRHPFDDTFVAAEHKPVLGMYLHRDDASGMALRSNRFSSVVNAGSGAGVHWAAVVTEAEKAALLAAMDG >Mature_476_residues ATRRRPDIRQLDCLDYWRFIIARRFPAIYRNSIQSIKRPMFESFNKDVVDAFARNKRRLTKNAASRQVRALLDEVGASAF KLLPHPFLFPADEFEMLARRARALLRAQNKIVRHLCRHRPRADLLAQCSLNPALARYVDWDELEAGRRRVARVDILPLPD GYAVCELNFSAAVGGAELFDCHRRFMQASGWPAFERGGSPYANLRALYEDTLRSMEIDRIVLLDWSSHAARGYATPELAR RYLAGIANGMPVDVHTELTYPSKWLGNGRGKGILIHRNFVYDDVTVNADRFDAIHRSGATFSNGLEAELLMSKAWLALLC DARFHPLLDEDEIAAIRNHVPHTFRLDEGTFAEALAHKDEWVFKLNVSYGGVDVLIGKDHPADALADRLRRQGIANWICQ AFRAVQTIRHPFDDTFVAAEHKPVLGMYLHRDDASGMALRSNRFSSVVNAGSGAGVHWAAVVTEAEKAALLAAMDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53772; Mature: 53641
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRRRPDIRQLDCLDYWRFIIARRFPAIYRNSIQSIKRPMFESFNKDVVDAFARNKRRL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TKNAASRQVRALLDEVGASAFKLLPHPFLFPADEFEMLARRARALLRAQNKIVRHLCRHR HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PRADLLAQCSLNPALARYVDWDELEAGRRRVARVDILPLPDGYAVCELNFSAAVGGAELF CCHHHHHHCCCCHHHHHHCCHHHHHHHHHHEEEEEEEECCCCCEEEEEEHHHHCCCHHHH DCHRRFMQASGWPAFERGGSPYANLRALYEDTLRSMEIDRIVLLDWSSHAARGYATPELA HHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH RRYLAGIANGMPVDVHTELTYPSKWLGNGRGKGILIHRNFVYDDVTVNADRFDAIHRSGA HHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCEEEEEECEEECCEEECHHHHHHHHHCCC TFSNGLEAELLMSKAWLALLCDARFHPLLDEDEIAAIRNHVPHTFRLDEGTFAEALAHKD CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHCCC EWVFKLNVSYGGVDVLIGKDHPADALADRLRRQGIANWICQAFRAVQTIRHPFDDTFVAA CEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE EHKPVLGMYLHRDDASGMALRSNRFSSVVNAGSGAGVHWAAVVTEAEKAALLAAMDG CCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCCCCCEEHHHHHHHHHHHEEEEECCC >Mature Secondary Structure ATRRRPDIRQLDCLDYWRFIIARRFPAIYRNSIQSIKRPMFESFNKDVVDAFARNKRRL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TKNAASRQVRALLDEVGASAFKLLPHPFLFPADEFEMLARRARALLRAQNKIVRHLCRHR HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PRADLLAQCSLNPALARYVDWDELEAGRRRVARVDILPLPDGYAVCELNFSAAVGGAELF CCHHHHHHCCCCHHHHHHCCHHHHHHHHHHEEEEEEEECCCCCEEEEEEHHHHCCCHHHH DCHRRFMQASGWPAFERGGSPYANLRALYEDTLRSMEIDRIVLLDWSSHAARGYATPELA HHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH RRYLAGIANGMPVDVHTELTYPSKWLGNGRGKGILIHRNFVYDDVTVNADRFDAIHRSGA HHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCEEEEEECEEECCEEECHHHHHHHHHCCC TFSNGLEAELLMSKAWLALLCDARFHPLLDEDEIAAIRNHVPHTFRLDEGTFAEALAHKD CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHCCC EWVFKLNVSYGGVDVLIGKDHPADALADRLRRQGIANWICQAFRAVQTIRHPFDDTFVAA CEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE EHKPVLGMYLHRDDASGMALRSNRFSSVVNAGSGAGVHWAAVVTEAEKAALLAAMDG CCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCCCCCEEHHHHHHHHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA