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The map label for this gene is yhcA [H]

Identifier: 53721157

GI number: 53721157

Start: 155912

End: 156622

Strand: Reverse

Name: yhcA [H]

Synonym: BPSS0121

Alternate gene names: 53721157

Gene position: 156622-155912 (Counterclockwise)

Preceding gene: 53721158

Following gene: 53721156

Centisome position: 4.94

GC content: 54.71

Gene sequence:

>711_bases
ATGAATTCACTCATGCTCTCTCATATTCTTTTTCGTTCTTCCCGTATCAAAACATTCCTGGCATCGCTTTTCGCCGCATG
CAGCCTGCAATCCCACGCAGCCACCTTTACCCTGGAAAATCCAACCATCATCTTCAACGAAACGGATCAACGCGTCGCCT
TCAACGTCAAAAACGACGGCGAAAGCCCGATGCTGCTCATCAGCAAGCTCGAAGACCTCGGTGAAGACAAGCTCAGTCAA
CGCTTCCTGATTGCGCCGCCAATCGCACGTATCGATCCTGGTCAAAGTCAGCAGATCAATTTTTCGCTCAAGAAGGGAGC
CAAGCTCGAGCACGAGTACATGCTCAAGGCGTCGTTCGAAGGGGTATCGCAAACTGGCCGCGGCTCGCTCGTGATGCCGG
TTCGCCAGGAAATCGGCTTTTTGGTCCAGGCCGGCGCGATTCCCGTTTCCAAAACCCCTTGGGATAACTTGAAGCTCAGC
GTCAAGGATAAGCAATTGACTCTCAGCAATCCGAGCGCGCACGTGATCCGGCTTGCGCCGAGCGTCAAACTGCTGCCCAC
GAACAAGATGGTCGCGCTTGCGCATGCTTATCTGATGCCGGGCGAATCACGGACTGTCGAAATCGACGACGCCACCGACA
AAATCGAGATCGTTCCACTCAGCCGCTACGGCCTCGTACTGCCCGCAGTCACGATGCCGGTCCAGCATTAA

Upstream 100 bases:

>100_bases
TCCCACTCCATGCTCGAATCACAAAATATAATATTGCATATGTCGAATCCATACAAAATAACCACCGCTTATCAGCCTTC
CGCATCATCAACTCCCTAAG

Downstream 100 bases:

>100_bases
TTTGGCGGAACGGAAGTCGGCGACGTCAACCGGCCGACTTCCGTTCTGCCAGCGCGCGCCATTCGCCTCAATACGCAGCA
TGCGCGCCACGGGCAATTTA

Product: putative periplasmic chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNSLMLSHILFRSSRIKTFLASLFAACSLQSHAATFTLENPTIIFNETDQRVAFNVKNDGESPMLLISKLEDLGEDKLSQ
RFLIAPPIARIDPGQSQQINFSLKKGAKLEHEYMLKASFEGVSQTGRGSLVMPVRQEIGFLVQAGAIPVSKTPWDNLKLS
VKDKQLTLSNPSAHVIRLAPSVKLLPTNKMVALAHAYLMPGESRTVEIDDATDKIEIVPLSRYGLVLPAVTMPVQH

Sequences:

>Translated_236_residues
MNSLMLSHILFRSSRIKTFLASLFAACSLQSHAATFTLENPTIIFNETDQRVAFNVKNDGESPMLLISKLEDLGEDKLSQ
RFLIAPPIARIDPGQSQQINFSLKKGAKLEHEYMLKASFEGVSQTGRGSLVMPVRQEIGFLVQAGAIPVSKTPWDNLKLS
VKDKQLTLSNPSAHVIRLAPSVKLLPTNKMVALAHAYLMPGESRTVEIDDATDKIEIVPLSRYGLVLPAVTMPVQH
>Mature_236_residues
MNSLMLSHILFRSSRIKTFLASLFAACSLQSHAATFTLENPTIIFNETDQRVAFNVKNDGESPMLLISKLEDLGEDKLSQ
RFLIAPPIARIDPGQSQQINFSLKKGAKLEHEYMLKASFEGVSQTGRGSLVMPVRQEIGFLVQAGAIPVSKTPWDNLKLS
VKDKQLTLSNPSAHVIRLAPSVKLLPTNKMVALAHAYLMPGESRTVEIDDATDKIEIVPLSRYGLVLPAVTMPVQH

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789609, Length=223, Percent_Identity=30.0448430493274, Blast_Score=117, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR016148
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26005; Mature: 26005

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLMLSHILFRSSRIKTFLASLFAACSLQSHAATFTLENPTIIFNETDQRVAFNVKNDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCEEEEEECCCC
ESPMLLISKLEDLGEDKLSQRFLIAPPIARIDPGQSQQINFSLKKGAKLEHEYMLKASFE
CCCCHHHHHHHHCCHHHHHCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHEEEEECCC
GVSQTGRGSLVMPVRQEIGFLVQAGAIPVSKTPWDNLKLSVKDKQLTLSNPSAHVIRLAP
CCCCCCCCCEEEECHHHCCEEEECCCCCCCCCCCCCEEEEEECCEEEECCCCCEEEEECC
SVKLLPTNKMVALAHAYLMPGESRTVEIDDATDKIEIVPLSRYGLVLPAVTMPVQH
CEEEECCCCEEEEEHHEECCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCC
>Mature Secondary Structure
MNSLMLSHILFRSSRIKTFLASLFAACSLQSHAATFTLENPTIIFNETDQRVAFNVKNDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCEEEEEECCCC
ESPMLLISKLEDLGEDKLSQRFLIAPPIARIDPGQSQQINFSLKKGAKLEHEYMLKASFE
CCCCHHHHHHHHCCHHHHHCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHEEEEECCC
GVSQTGRGSLVMPVRQEIGFLVQAGAIPVSKTPWDNLKLSVKDKQLTLSNPSAHVIRLAP
CCCCCCCCCEEEECHHHCCEEEECCCCCCCCCCCCCEEEEEECCEEEECCCCCEEEEECC
SVKLLPTNKMVALAHAYLMPGESRTVEIDDATDKIEIVPLSRYGLVLPAVTMPVQH
CEEEECCCCEEEEEHHEECCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1447980; 9278503 [H]