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The map label for this gene is yhcD [H]

Identifier: 53721156

GI number: 53721156

Start: 153167

End: 155551

Strand: Reverse

Name: yhcD [H]

Synonym: BPSS0120

Alternate gene names: 53721156

Gene position: 155551-153167 (Counterclockwise)

Preceding gene: 53721157

Following gene: 53721155

Centisome position: 4.9

GC content: 60.67

Gene sequence:

>2385_bases
GTGTACGCAAGACGGTTGGTCCTGTCGTTTAGCTTGCTCCTCGGCATCGCATGGGGAAGCAACGACGCACTCGCCGTCTC
GTCGCCTTCGCCCAGCGCGGCGGTTGAATTCGACACCCAAACGCTGATTGCGCGAGGCTATTCCGCCGACATTGCAAAAT
TCTTCAGCGGCGATTCGCGCTTTCTCCCCGGCAAGCAGGAGGTCACGATCGCACTCAACGCCAACCAGACCTACACGACG
AACGTTCAATTTGATGACGACGGCGATCCGTGCTTCGACGCCGCGCTGTTGGACACGCTGCGACTGCGCAAACCATCCGA
TCTGGCCGGCTGCGCCGATCCCGAACAAATGTGGCCGGAATTTCACATGAAACTCCACCCTGGGCAGTTTCGAATCGACA
TGACCGTGCCGGAGGAAGCATTCGACCCACGGCGACGCGGCAACGGACTGCACTCCGGCGGCGAGGCGGTGTTACTGAAT
TACGATGTCTTCGCGCAGCGCTTCGATACCCGGTTCGGCAGCAGCCATTACTTACAGGCACGGCTCGAGCCCGGCTTCAA
TATCGGAAACTGGTTTTTCCGTAACCGTGGAGCGCTGACCCATTCAGGCAAGGGATTCTCGTATCAGTTGCAAGACACCT
ACCTCGCGCGTACCGTCGACGCGTGGGGGGCCATCACGCAGATCGGCCAGTTCACGTCCACAGGCGAAAATCTGGGCGGC
CTGCCGATGCTCGGCTTCCAGATCAGTTCGGACCGCTTGCAAAATAGCGGGCAACTGACCGTTCCCATCCAAGGCATCGC
GGAAAGCAACGCGACGGTCGAAGTGCGTCAGCGCGGCCGTGTCGTCTATCGCACGATCGTCCCGCCCGGGCCTTTCATGC
TGTCCGACATCGGCAGCGTCGCGCAGAACGCCGACCTCCAAATCGAAATCACCGAACAGGACGGACGAAAGCGACGCTTC
GAGATGCCCGTCGGCATGGGCTATGCCGACGCGAAGCAGCCGACGACTTGGCAGGCCGCCATCGGCCGCTATCAGGATGC
AGGCAATTCCGATCGAACGCGTGCACCCGCGATATTCGCCACCGGTGAAATCTCTTTCTCACCGCTCGACAATCTACGCG
TGTCGACCGCCGCGCTCGCGGCCTCCGGCTATCTTCATGCGAGCGTCCAAGGAACGCTTTCGGCGAAATCCGGAGCATGG
CTTGCAAGCGGAGTGCGCTATTCGCGGATGGCTGGCGCGGGCCAAGGATATCAGTTCGAGTTACAAGGCTCGTCCCGAAT
CGGAGGAAACGTGTTCGCATCCGCCTCATGGCTGTCGCGCTCGATTCGCTATACCACGCCAGATGTCGCGCTCGGATCGC
TTGGCGATGCAACCGGAACCGGTCAAACCAAGCATTCGGCGAACGCGTCGATCAACTGGGCCCATCCGCGTTGGGGTAGC
TTTACGTATGGCCTGTCGTACAACAGTTTCGTCGGCGCACCGAACTCCGTATCTCACACGCTGAGCATCGGTCGCAAGAT
CGGTCGGGCAAACGTCAGCCTTGCCGCACAAATCAGCCCCAAGAGCGGCAGCAGCGTCTACGCCAACGTGTCGATTCCGC
TAGGCGGTGGTTCGTTGAGTGCGCGAACCACGCGCTCGCAGCGGGGGGATCTCACGTTCGGCACGTCCTACGGCAATCGA
TTGGGACGAGACGGATCGTATTCCATCGGCGCATCGGGCAGCAAGAGCGGCCAGACCGCGAACGCGTCCGTCAGCATGAG
GACGGGCTTCGCTCAATTTGGCGCCGGCGTGGCTCAGAGTACGTCCAACTCACGGTCTACCTACCTGTCTGCAAGCGGAG
GCATCGCCTACGCCAATGGACTATTCGGCACGGCATCCAGCCGGATCGGGGAAACGTTCGCCATCGTGTCGGTCCCGAAC
CAAAAGGGTTTGCGCATCAGCGCACCTGGTGGAACGTCCATCACCAACCCATTCGGCACCGCAGTCATCTCTTCCCTGAC
GCCCTACACGAAAGCGCAACTCAGACTCGATACGCAAAGCCTTCCCATGAATGTGCGTCTCGACACGACCACCGTCGACA
TCGGGCTCCGACGGGGCAGCGTGCTGACGCGCACGATCCATGCAGCCGAAACGCGACAGCTCATGTTGACGATACGAGAT
TCGACCGGTGCCACCGCACCGGTCGGCACCACCGTGCTTGATGAGCAAGGCCAGTTCCTCGGCACGATCATCGGAGATGG
GAACTTCATCCTGAATGACGACGACATCGGTAGGCCGATCAGGTTGTCGGGCGTCAATCGTAGCGAGTGCCGCGTGACCT
ACGAGGCACCCGCACGGTTCGATCCAAATCAGCCTTATGAAGAGGCAGAAGGAACATGCGGGTGA

Upstream 100 bases:

>100_bases
GCACATCGCCGGTTGCGCCTTCCGCCCATGGAAAGCTCGCGACTCAACGCGGCCCGCTTCCCTCGCCAACTCAACCAGCG
CCGCTGCCGGGAGATACATT

Downstream 100 bases:

>100_bases
TCCGGTGCGTCCGCCGGCAATCCTGCGTCGAGCCTTTATGCGCCCCGCCACGGAAACACACGCCCTCATTGCGGAGAAGC
ACTCGATCGCTTCTTTCTTT

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 794; Mature: 794

Protein sequence:

>794_residues
MYARRLVLSFSLLLGIAWGSNDALAVSSPSPSAAVEFDTQTLIARGYSADIAKFFSGDSRFLPGKQEVTIALNANQTYTT
NVQFDDDGDPCFDAALLDTLRLRKPSDLAGCADPEQMWPEFHMKLHPGQFRIDMTVPEEAFDPRRRGNGLHSGGEAVLLN
YDVFAQRFDTRFGSSHYLQARLEPGFNIGNWFFRNRGALTHSGKGFSYQLQDTYLARTVDAWGAITQIGQFTSTGENLGG
LPMLGFQISSDRLQNSGQLTVPIQGIAESNATVEVRQRGRVVYRTIVPPGPFMLSDIGSVAQNADLQIEITEQDGRKRRF
EMPVGMGYADAKQPTTWQAAIGRYQDAGNSDRTRAPAIFATGEISFSPLDNLRVSTAALAASGYLHASVQGTLSAKSGAW
LASGVRYSRMAGAGQGYQFELQGSSRIGGNVFASASWLSRSIRYTTPDVALGSLGDATGTGQTKHSANASINWAHPRWGS
FTYGLSYNSFVGAPNSVSHTLSIGRKIGRANVSLAAQISPKSGSSVYANVSIPLGGGSLSARTTRSQRGDLTFGTSYGNR
LGRDGSYSIGASGSKSGQTANASVSMRTGFAQFGAGVAQSTSNSRSTYLSASGGIAYANGLFGTASSRIGETFAIVSVPN
QKGLRISAPGGTSITNPFGTAVISSLTPYTKAQLRLDTQSLPMNVRLDTTTVDIGLRRGSVLTRTIHAAETRQLMLTIRD
STGATAPVGTTVLDEQGQFLGTIIGDGNFILNDDDIGRPIRLSGVNRSECRVTYEAPARFDPNQPYEEAEGTCG

Sequences:

>Translated_794_residues
MYARRLVLSFSLLLGIAWGSNDALAVSSPSPSAAVEFDTQTLIARGYSADIAKFFSGDSRFLPGKQEVTIALNANQTYTT
NVQFDDDGDPCFDAALLDTLRLRKPSDLAGCADPEQMWPEFHMKLHPGQFRIDMTVPEEAFDPRRRGNGLHSGGEAVLLN
YDVFAQRFDTRFGSSHYLQARLEPGFNIGNWFFRNRGALTHSGKGFSYQLQDTYLARTVDAWGAITQIGQFTSTGENLGG
LPMLGFQISSDRLQNSGQLTVPIQGIAESNATVEVRQRGRVVYRTIVPPGPFMLSDIGSVAQNADLQIEITEQDGRKRRF
EMPVGMGYADAKQPTTWQAAIGRYQDAGNSDRTRAPAIFATGEISFSPLDNLRVSTAALAASGYLHASVQGTLSAKSGAW
LASGVRYSRMAGAGQGYQFELQGSSRIGGNVFASASWLSRSIRYTTPDVALGSLGDATGTGQTKHSANASINWAHPRWGS
FTYGLSYNSFVGAPNSVSHTLSIGRKIGRANVSLAAQISPKSGSSVYANVSIPLGGGSLSARTTRSQRGDLTFGTSYGNR
LGRDGSYSIGASGSKSGQTANASVSMRTGFAQFGAGVAQSTSNSRSTYLSASGGIAYANGLFGTASSRIGETFAIVSVPN
QKGLRISAPGGTSITNPFGTAVISSLTPYTKAQLRLDTQSLPMNVRLDTTTVDIGLRRGSVLTRTIHAAETRQLMLTIRD
STGATAPVGTTVLDEQGQFLGTIIGDGNFILNDDDIGRPIRLSGVNRSECRVTYEAPARFDPNQPYEEAEGTCG
>Mature_794_residues
MYARRLVLSFSLLLGIAWGSNDALAVSSPSPSAAVEFDTQTLIARGYSADIAKFFSGDSRFLPGKQEVTIALNANQTYTT
NVQFDDDGDPCFDAALLDTLRLRKPSDLAGCADPEQMWPEFHMKLHPGQFRIDMTVPEEAFDPRRRGNGLHSGGEAVLLN
YDVFAQRFDTRFGSSHYLQARLEPGFNIGNWFFRNRGALTHSGKGFSYQLQDTYLARTVDAWGAITQIGQFTSTGENLGG
LPMLGFQISSDRLQNSGQLTVPIQGIAESNATVEVRQRGRVVYRTIVPPGPFMLSDIGSVAQNADLQIEITEQDGRKRRF
EMPVGMGYADAKQPTTWQAAIGRYQDAGNSDRTRAPAIFATGEISFSPLDNLRVSTAALAASGYLHASVQGTLSAKSGAW
LASGVRYSRMAGAGQGYQFELQGSSRIGGNVFASASWLSRSIRYTTPDVALGSLGDATGTGQTKHSANASINWAHPRWGS
FTYGLSYNSFVGAPNSVSHTLSIGRKIGRANVSLAAQISPKSGSSVYANVSIPLGGGSLSARTTRSQRGDLTFGTSYGNR
LGRDGSYSIGASGSKSGQTANASVSMRTGFAQFGAGVAQSTSNSRSTYLSASGGIAYANGLFGTASSRIGETFAIVSVPN
QKGLRISAPGGTSITNPFGTAVISSLTPYTKAQLRLDTQSLPMNVRLDTTTVDIGLRRGSVLTRTIHAAETRQLMLTIRD
STGATAPVGTTVLDEQGQFLGTIIGDGNFILNDDDIGRPIRLSGVNRSECRVTYEAPARFDPNQPYEEAEGTCG

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789610, Length=785, Percent_Identity=29.2993630573248, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI1786332, Length=793, Percent_Identity=23.203026481715, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1790772, Length=330, Percent_Identity=30.6060606060606, Blast_Score=116, Evalue=7e-27,
Organism=Escherichia coli, GI1788427, Length=782, Percent_Identity=22.7621483375959, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1787172, Length=300, Percent_Identity=27.6666666666667, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI87081778, Length=399, Percent_Identity=24.812030075188, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1789533, Length=325, Percent_Identity=25.5384615384615, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786744, Length=252, Percent_Identity=26.5873015873016, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 84724; Mature: 84724

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYARRLVLSFSLLLGIAWGSNDALAVSSPSPSAAVEFDTQTLIARGYSADIAKFFSGDSR
CCHHHHHHHHHHHEEEEECCCCEEEEECCCCCCEEEECCCEEEECCCCHHHHHHHCCCCC
FLPGKQEVTIALNANQTYTTNVQFDDDGDPCFDAALLDTLRLRKPSDLAGCADPEQMWPE
CCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCH
FHMKLHPGQFRIDMTVPEEAFDPRRRGNGLHSGGEAVLLNYDVFAQRFDTRFGSSHYLQA
HEEEECCCEEEEEEECCHHHCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEE
RLEPGFNIGNWFFRNRGALTHSGKGFSYQLQDTYLARTVDAWGAITQIGQFTSTGENLGG
ECCCCCCCCCEEEECCCCEEECCCCEEEEECCCEEHHHHHHHHHHHHHHCCCCCCCCCCC
LPMLGFQISSDRLQNSGQLTVPIQGIAESNATVEVRQRGRVVYRTIVPPGPFMLSDIGSV
CEEEEEEECHHHHCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHH
AQNADLQIEITEQDGRKRRFEMPVGMGYADAKQPTTWQAAIGRYQDAGNSDRTRAPAIFA
HCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE
TGEISFSPLDNLRVSTAALAASGYLHASVQGTLSAKSGAWLASGVRYSRMAGAGQGYQFE
ECCEEECCCCCCEEEHHHHHCCCEEEEEEEEEEECCCCCEECCCCCHHHHCCCCCCEEEE
LQGSSRIGGNVFASASWLSRSIRYTTPDVALGSLGDATGTGQTKHSANASINWAHPRWGS
ECCCCCCCCEEEEEHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
FTYGLSYNSFVGAPNSVSHTLSIGRKIGRANVSLAAQISPKSGSSVYANVSIPLGGGSLS
EEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCC
ARTTRSQRGDLTFGTSYGNRLGRDGSYSIGASGSKSGQTANASVSMRTGFAQFGAGVAQS
CCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCHHHHCCCHHCC
TSNSRSTYLSASGGIAYANGLFGTASSRIGETFAIVSVPNQKGLRISAPGGTSITNPFGT
CCCCCEEEEECCCCEEEECCCCCCCHHCCCCEEEEEECCCCCCEEEECCCCCCCCCCHHH
AVISSLTPYTKAQLRLDTQSLPMNVRLDTTTVDIGLRRGSVLTRTIHAAETRQLMLTIRD
HHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEHHCCCEEEEEEEEC
STGATAPVGTTVLDEQGQFLGTIIGDGNFILNDDDIGRPIRLSGVNRSECRVTYEAPARF
CCCCCCCCCCEEECCCCCEEEEEEECCCEEECCCCCCCEEEECCCCCCCEEEEEECCCCC
DPNQPYEEAEGTCG
CCCCCHHHCCCCCC
>Mature Secondary Structure
MYARRLVLSFSLLLGIAWGSNDALAVSSPSPSAAVEFDTQTLIARGYSADIAKFFSGDSR
CCHHHHHHHHHHHEEEEECCCCEEEEECCCCCCEEEECCCEEEECCCCHHHHHHHCCCCC
FLPGKQEVTIALNANQTYTTNVQFDDDGDPCFDAALLDTLRLRKPSDLAGCADPEQMWPE
CCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCH
FHMKLHPGQFRIDMTVPEEAFDPRRRGNGLHSGGEAVLLNYDVFAQRFDTRFGSSHYLQA
HEEEECCCEEEEEEECCHHHCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEE
RLEPGFNIGNWFFRNRGALTHSGKGFSYQLQDTYLARTVDAWGAITQIGQFTSTGENLGG
ECCCCCCCCCEEEECCCCEEECCCCEEEEECCCEEHHHHHHHHHHHHHHCCCCCCCCCCC
LPMLGFQISSDRLQNSGQLTVPIQGIAESNATVEVRQRGRVVYRTIVPPGPFMLSDIGSV
CEEEEEEECHHHHCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHH
AQNADLQIEITEQDGRKRRFEMPVGMGYADAKQPTTWQAAIGRYQDAGNSDRTRAPAIFA
HCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE
TGEISFSPLDNLRVSTAALAASGYLHASVQGTLSAKSGAWLASGVRYSRMAGAGQGYQFE
ECCEEECCCCCCEEEHHHHHCCCEEEEEEEEEEECCCCCEECCCCCHHHHCCCCCCEEEE
LQGSSRIGGNVFASASWLSRSIRYTTPDVALGSLGDATGTGQTKHSANASINWAHPRWGS
ECCCCCCCCEEEEEHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
FTYGLSYNSFVGAPNSVSHTLSIGRKIGRANVSLAAQISPKSGSSVYANVSIPLGGGSLS
EEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCC
ARTTRSQRGDLTFGTSYGNRLGRDGSYSIGASGSKSGQTANASVSMRTGFAQFGAGVAQS
CCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCHHHHCCCHHCC
TSNSRSTYLSASGGIAYANGLFGTASSRIGETFAIVSVPNQKGLRISAPGGTSITNPFGT
CCCCCEEEEECCCCEEEECCCCCCCHHCCCCEEEEEECCCCCCEEEECCCCCCCCCCHHH
AVISSLTPYTKAQLRLDTQSLPMNVRLDTTTVDIGLRRGSVLTRTIHAAETRQLMLTIRD
HHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEHHCCCEEEEEEEEC
STGATAPVGTTVLDEQGQFLGTIIGDGNFILNDDDIGRPIRLSGVNRSECRVTYEAPARF
CCCCCCCCCCEEECCCCCEEEEEEECCCEEECCCCCCCEEEECCCCCCCEEEEEECCCCC
DPNQPYEEAEGTCG
CCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]