Click here to switch to the map view.

The map label for this gene is nahR [H]

Identifier: 53721080

GI number: 53721080

Start: 40276

End: 41202

Strand: Reverse

Name: nahR [H]

Synonym: BPSS0041

Alternate gene names: 53721080

Gene position: 41202-40276 (Counterclockwise)

Preceding gene: 53721088

Following gene: 53721079

Centisome position: 1.3

GC content: 68.5

Gene sequence:

>927_bases
GTGATGCCTGACCTCGATCTGAACCTGATTCCGTATCTGGTCGCGCTCAACGAGGCGCGCAACGTGAGCCGCGCGGGCGA
GCTGCTCGGCGTGAGCCAGCCGCGTGTGAGCGCGGCGCTCGGGCGGCTGCGCGAGCACTTCGGCGATCCGCTGTTCGTGC
GGACCTCGCGCGGCATGGAGCCGACGCCTCGCGCGCTCGCCCTGATTCCGGCCGCGCGCGACGCGCTCGCGAGCATCGAG
CGCGGTCTCGGCGCACCGCACGAGTTCGACCCGGCGAAGAGCGCGCGCACGTTCTCGATCGCGCTGTCCGACGTCGGCGA
AATCGTGTTCCTGCCGAGGCTGCTGCAAGCGTTCGCGCAACACGCGCCGCATGCGAACCTGCGCTCGGCATCGCTGTCGC
ACGCGGAAGTCGCGCACGCGCTCGAGGACGGCGGCGTCGATCTCGCGGTCGGCTACTTTCCGGATCTCGGCGGCACGAAC
TTCTTCCAGCAGCGGCTTTTCACGCACCGCTTCATCTGCCTGCTGCGGCGCGGCCACCCGCTCGCCGAGCGGCCGCTCAC
GCTCGAGCGGTTTCTCGCGTGCGGCCACGCGGTGGTGCGAGCGGAAGGCCGCAGCCAGGAGGTGCTCGAGCAGTATCTGA
CGAAGCGGCGCCTCACGCGCCGGGCGGTGCTCGAGACACCGCATTTCATGAGCCTGCCGTTCATCCTGAGCCGCACCGAC
CTGATCGCGACGGTGCCGCATGCGATCGGCTATGCATATGCGGCCGAGCATGCGTCGATCACGCTCGTCGAGCCGCCGCT
GCCTTTGCCGCGCTTCGATCTGAAGCAGCATTGGCATCGCAAGTTCCATAACGATCCGAGCATCACGTGGCTGCGCGGCG
TCGTCGCCCAGCTGTTCAACGATGCGCTCGACGAATGGCCGAAGTGA

Upstream 100 bases:

>100_bases
AACATTGATTCGAATAGTGAATCGATTGTCAGCGCTATCCCGACTATGCGGCAATGCAATTTAGGAGATAAGTTGTATAC
GGATATCCAATAGTAGTGAC

Downstream 100 bases:

>100_bases
CGGCGAACGGCGGCCGCGCACGACGCATGGGGCAACGCGCGGCCGCCGTTCGCAAAGCGAGTCACGGCGCACGCTCGCGA
CGAAAGCATGAAACAATGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MMPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEPTPRALALIPAARDALASIE
RGLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQHAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTN
FFQQRLFTHRFICLLRRGHPLAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTD
LIATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFNDALDEWPK

Sequences:

>Translated_308_residues
MMPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEPTPRALALIPAARDALASIE
RGLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQHAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTN
FFQQRLFTHRFICLLRRGHPLAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTD
LIATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFNDALDEWPK
>Mature_308_residues
MMPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGMEPTPRALALIPAARDALASIE
RGLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQHAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTN
FFQQRLFTHRFICLLRRGHPLAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTD
LIATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFNDALDEWPK

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=290, Percent_Identity=27.5862068965517, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790147, Length=308, Percent_Identity=25, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081766, Length=299, Percent_Identity=24.7491638795987, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786820, Length=306, Percent_Identity=21.5686274509804, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34347; Mature: 34347

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGME
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
PTPRALALIPAARDALASIERGLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQ
CCCHHEEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
HAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTNFFQQRLFTHRFICLLRRGHP
HCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
LAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTD
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHH
LIATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFN
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
DALDEWPK
HHHHHCCC
>Mature Secondary Structure
MMPDLDLNLIPYLVALNEARNVSRAGELLGVSQPRVSAALGRLREHFGDPLFVRTSRGME
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
PTPRALALIPAARDALASIERGLGAPHEFDPAKSARTFSIALSDVGEIVFLPRLLQAFAQ
CCCHHEEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
HAPHANLRSASLSHAEVAHALEDGGVDLAVGYFPDLGGTNFFQQRLFTHRFICLLRRGHP
HCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
LAERPLTLERFLACGHAVVRAEGRSQEVLEQYLTKRRLTRRAVLETPHFMSLPFILSRTD
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHH
LIATVPHAIGYAYAAEHASITLVEPPLPLPRFDLKQHWHRKFHNDPSITWLRGVVAQLFN
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
DALDEWPK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]