Click here to switch to the map view.

The map label for this gene is ccsB [H]

Identifier: 53720788

GI number: 53720788

Start: 3786955

End: 3789054

Strand: Reverse

Name: ccsB [H]

Synonym: BPSL3180

Alternate gene names: 53720788

Gene position: 3789054-3786955 (Counterclockwise)

Preceding gene: 53720789

Following gene: 53720787

Centisome position: 92.99

GC content: 66.33

Gene sequence:

>2100_bases
ATGCGATTTGCGATCGCGCTGCTCGTCGTCCTGTCGATCGCGAGCATCATCGGCACGGTTCTCACGCAGGACGATCCGTA
CCCTAACTACGTCAATCAGTTCGGCCCGTTCTGGGCCGACATCTTCCGCTCGCTGAGCCTCTATACGGTCTACAGCGCGT
GGTGGTTCATGCTGATCCTGATCTTCCTCGTCGTGTCGATCTCGCTGTGCGTGATCCGCAACGCGCCGAAGATGCTCGCC
GACGCGAAGAGCTGGAAGGACAAGGTCCGCGAAGGCAGCCTGCGCGCGTTTCATCACAAGGCGGAGTTCGCGGTCGCGGG
CGATCGCGCGCGCGCGACGCAGACCGTCGCCGCGTTCGTCGCGAAGGCGGGCTATCGGCATGTCGTGCGCGAAGCGGGCG
GCGCGACGCTCGTCGCCGCGAAGCGCGGCGCGATGACGAAGTTCGGCTACATCGCCGCGCACCTCGCGATCGTCGTGATC
TGCGTGGGCGGTCTGCTCGACAGCAACCTGCCGATCAAATTCCAGATGTGGATGTTCGGCAAGAGCCCCGTCAACACGAG
CGCGACGATCAGCGAGATCGGAGCCGAGCACCGGCTGTCCGCGTCGAATCCGACGTTTCGCGGCTACGCGTGGGTGCCGG
AGGGCCAGTATGTATCGACGGCGATCCTCAATCAGCCGACGGGCTCGCTGATCCAGGATCTGCCGTTCTCGATCCAGCTC
GAGAAATTCATCGTCGACTATTACTCGACCGGCATGCCGAAGCTCTTCGCGAGCGACATCGTCGTCGTCGATCGCGAGAC
GGGCAAGCGGATTCCGGCGCGCGTCGAGGTCAACAAGCCGTTCGCGTACAAGGGCGTGTCGATCTATCAATCGAGTTTCC
AGGACGGCGGCTCGCTGATGGAAATGACCGCGTATCCGATGACGGGCGCGAGCGCCGCGACGTTCCCGTTCAAGGGCACG
ATCGGCAATTCGGTGCCGCTCGCGGCGGCGGGCGCCGACGGCGAGACCGTCGAGTTCTCCGATTTCCGTGCGATCAACGT
CGAGAACGTCACCGACGCGAACGGCAAGACCGACGCGCGCGGCGTCGCGGCGAACCGCTCGATCAAGGAACTCTTCGACG
CGCGGCTCGGCTCCGGCGCGAAGACGTCGAAGCCCGTCGAACTGCACAACATCGGGCCTTCGGTTCAGTACAAGGTGCGC
GGCAAGGACGGCCAGGCGCGCGAATTCAACAACTACATGCTGCCCGTCGACATGGGCGGCGAGCGCGTGTTCCTCGCGGG
CGTGCGCGCGAGCCCGAACGACCCGTTCCGCTATCTGCGGATTCCGGCCGACAGCCGCGACAGCGTCGGCGAATGGATGC
GGCTGCGCGCGGCGCTCGAAGATCCGGCCGTGCGCATCGAGGCGGCGCGCCGCTTCGCGCGGCATTCGCTCGGCACGGGC
GATGCCGCGCTGCGCGACCGGCTCGAGGACAGCGCGCAGCGCGTCCTGACCCTGTTCGCCGGCGCGGACGGCAGCATCGG
CCGTGGCGCGGACGGCAATCCGATCGGCGGCTTCCAGTCGGTCGCGACGTTCATCGACCGCTCGGTGCCGAAGGATGAGA
AGGAGAAGGCCGCCGCCTTGCTGCTGCGGATGCTCGAGGGTTCGATGTGGGAGGTTTGGCAAATCGCGCGCGAACGCGCG
GGCGAGCCGCCCGTCCAGCAGGCGCAGGATACGGTGCGCTTCGTGCAGAACGCGATCAACGCGCTGTCGGACAGTTTCCT
GTACGGCGCGCCGGTTTATCTGCAGCTCGATTCGTTCAAGCAGGTGCAGGCGTCGGTGTTCCAGCTGACGCGCGCGCCGG
GCAAGAATCTGGTGTATCTTGGCAGCCTGCTGCTCGTCGCCGGCATCTTCGCGATGTTCTACGTGCGCGAGCGACGCCTC
TGGTTCTGGCTCAAGGATACGGGCGCGGGCGTCAGCGTGCTGATGGCGATGTCCACCGCGCGCAAGACGTTCGACTTCGA
AAAGGAATTCGTGCAGACGCGCGACGCGGCCGGGGCCGCCCTCGGCGCGCCGGCCTTCCGCGCGCCCGACGGCGCCGGCA
CCAAGGACTCGACTCGGTAA

Upstream 100 bases:

>100_bases
TTTGCTGTGAGTTGGAGTTTGAATGAGCGTTACCACGTCGGGGTTGCAGTCGAGAACGGGACCGTCCGCGGTCAGGCGCG
CGGTCGAGCTGTTGAGCTCG

Downstream 100 bases:

>100_bases
CATCATGGATCTGACCCAAGTTTCGTCTTCCCGCGCGCGGCGCGCTTCCGGCGCGGCTGCGCCGCTGCTCTTCGACGAGC
GGCCGTTCCTGCGGCGGCTG

Product: putative cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 699; Mature: 699

Protein sequence:

>699_residues
MRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLILIFLVVSISLCVIRNAPKMLA
DAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAKRGAMTKFGYIAAHLAIVVI
CVGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTAILNQPTGSLIQDLPFSIQL
EKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFAYKGVSIYQSSFQDGGSLMEMTAYPMTGASAATFPFKGT
IGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDARGVAANRSIKELFDARLGSGAKTSKPVELHNIGPSVQYKVR
GKDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALEDPAVRIEAARRFARHSLGTG
DAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAALLLRMLEGSMWEVWQIARERA
GEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLGSLLLVAGIFAMFYVRERRL
WFWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR

Sequences:

>Translated_699_residues
MRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLILIFLVVSISLCVIRNAPKMLA
DAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAKRGAMTKFGYIAAHLAIVVI
CVGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTAILNQPTGSLIQDLPFSIQL
EKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFAYKGVSIYQSSFQDGGSLMEMTAYPMTGASAATFPFKGT
IGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDARGVAANRSIKELFDARLGSGAKTSKPVELHNIGPSVQYKVR
GKDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALEDPAVRIEAARRFARHSLGTG
DAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAALLLRMLEGSMWEVWQIARERA
GEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLGSLLLVAGIFAMFYVRERRL
WFWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR
>Mature_699_residues
MRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLILIFLVVSISLCVIRNAPKMLA
DAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFVAKAGYRHVVREAGGATLVAAKRGAMTKFGYIAAHLAIVVI
CVGGLLDSNLPIKFQMWMFGKSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTAILNQPTGSLIQDLPFSIQL
EKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFAYKGVSIYQSSFQDGGSLMEMTAYPMTGASAATFPFKGT
IGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDARGVAANRSIKELFDARLGSGAKTSKPVELHNIGPSVQYKVR
GKDGQAREFNNYMLPVDMGGERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALEDPAVRIEAARRFARHSLGTG
DAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAALLLRMLEGSMWEVWQIARERA
GEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFKQVQASVFQLTRAPGKNLVYLGSLLLVAGIFAMFYVRERRL
WFWLKDTGAGVSVLMAMSTARKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 76305; Mature: 76305

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLIL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
IFLVVSISLCVIRNAPKMLADAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCHHHHHHHHHHHH
AKAGYRHVVREAGGATLVAAKRGAMTKFGYIAAHLAIVVICVGGLLDSNLPIKFQMWMFG
HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
KSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTAILNQPTGSLIQDLPFSIQL
CCCCCCCHHHHHHCHHHCCCCCCCCCCEEEECCCCCEEEHHHHCCCCHHHHHHCCCCEEH
EKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFAYKGVSIYQSSFQDGGSLM
HHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCEECCHHHHHHHHCCCCCEE
EMTAYPMTGASAATFPFKGTIGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDAR
EEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCEEEEECCCCCCCCCCCCCC
GVAANRSIKELFDARLGSGAKTSKPVELHNIGPSVQYKVRGKDGQAREFNNYMLPVDMGG
CCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCCEECCCEEEEEECCC
ERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALEDPAVRIEAARRFARHSLGTG
CEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
DAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
LLRMLEGSMWEVWQIARERAGEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFK
HHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEECCHH
QVQASVFQLTRAPGKNLVYLGSLLLVAGIFAMFYVRERRLWFWLKDTGAGVSVLMAMSTA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHH
RKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFAIALLVVLSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSAWWFMLIL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
IFLVVSISLCVIRNAPKMLADAKSWKDKVREGSLRAFHHKAEFAVAGDRARATQTVAAFV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCHHHHHHHHHHHH
AKAGYRHVVREAGGATLVAAKRGAMTKFGYIAAHLAIVVICVGGLLDSNLPIKFQMWMFG
HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
KSPVNTSATISEIGAEHRLSASNPTFRGYAWVPEGQYVSTAILNQPTGSLIQDLPFSIQL
CCCCCCCHHHHHHCHHHCCCCCCCCCCEEEECCCCCEEEHHHHCCCCHHHHHHCCCCEEH
EKFIVDYYSTGMPKLFASDIVVVDRETGKRIPARVEVNKPFAYKGVSIYQSSFQDGGSLM
HHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCEECCHHHHHHHHCCCCCEE
EMTAYPMTGASAATFPFKGTIGNSVPLAAAGADGETVEFSDFRAINVENVTDANGKTDAR
EEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCEEEEECCCCCCCCCCCCCC
GVAANRSIKELFDARLGSGAKTSKPVELHNIGPSVQYKVRGKDGQAREFNNYMLPVDMGG
CCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCCEECCCEEEEEECCC
ERVFLAGVRASPNDPFRYLRIPADSRDSVGEWMRLRAALEDPAVRIEAARRFARHSLGTG
CEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
DAALRDRLEDSAQRVLTLFAGADGSIGRGADGNPIGGFQSVATFIDRSVPKDEKEKAAAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
LLRMLEGSMWEVWQIARERAGEPPVQQAQDTVRFVQNAINALSDSFLYGAPVYLQLDSFK
HHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEECCHH
QVQASVFQLTRAPGKNLVYLGSLLLVAGIFAMFYVRERRLWFWLKDTGAGVSVLMAMSTA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHH
RKTFDFEKEFVQTRDAAGAALGAPAFRAPDGAGTKDSTR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14621292 [H]