Click here to switch to the map view.

The map label for this gene is cycA [H]

Identifier: 53720789

GI number: 53720789

Start: 3789263

End: 3789910

Strand: Reverse

Name: cycA [H]

Synonym: BPSL3181

Alternate gene names: 53720789

Gene position: 3789910-3789263 (Counterclockwise)

Preceding gene: 53720792

Following gene: 53720788

Centisome position: 93.01

GC content: 65.9

Gene sequence:

>648_bases
ATGAATCGACTGAGCAAGTCTTTGGTGGTGCTTCAGTTCGCGGTAGCAGGGCTCGCAGGTTTCATGGCGGAGGCAAGGGC
GGCGGATGCGGCGAAGCCGGATCTCGACCGAGGCAAGGCAATCGCGACGCAGGTATGCGCGGCATGCCACGGCGTCGACG
GCAACAGCGCGACGGGTTCGTTCCCGAAGCTCGCCGGTCAGCATCCCGATTATCTCGTCAAGCAATTGCACGATTTCAAG
ACGCAGCCGGGCGCGAAGGGGCCGGTGCGCGTCAATTCCGTGATGGTCGGATTCGCAAGCGCGCTGAACGATCAGGACGC
GCGCAACGTCGCCGCCTATTACGGATCGCAGTCGGCCAAGCCGGGCGCCGCGCGCAACGCGGCCACCGTGCCCGTCGGGC
AGAAGATCTATCGCGGCGGCATCGCCGAGAAGGGCGTGCCCGCCTGCGCGAGCTGCCACGGGCCGACTGGGCAGGGGATT
CCGGTCCAGTACCCGCGGTTGTCGGGGCAATGGGCCGACTATACCGTCGCGCAGTTGACCGCGTTCCAGCAAGGCACGCG
CAGCAACGACGCGATGCATCAGATCGCGTTGCGGCTGACGGACAGCGAGGTCAAGGCCGTCGCCGATTACATCGCCGGCC
TGCATTGA

Upstream 100 bases:

>100_bases
GCAGGCGGTGGAAGCTTCGGAGCGCGCTTCTACGGTAGACTGGGCGCCGTCGTTTTTTGCAGAACCTCACTACTCCCACA
AGACGAAACAAGGTGTGCGA

Downstream 100 bases:

>100_bases
CCCGGGTTTCCGGTTCGCGAGCCGAATGAACGAGCCGGCCGCCCATGCGGCGGCCGCTAGAACAAGAAAAGGGTGGGGCG
CCGTCGAAGTACGGCCGCCT

Product: cytochrome C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNRLSKSLVVLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHPDYLVKQLHDFK
TQPGAKGPVRVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGI
PVQYPRLSGQWADYTVAQLTAFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH

Sequences:

>Translated_215_residues
MNRLSKSLVVLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHPDYLVKQLHDFK
TQPGAKGPVRVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGI
PVQYPRLSGQWADYTVAQLTAFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH
>Mature_215_residues
MNRLSKSLVVLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGSFPKLAGQHPDYLVKQLHDFK
TQPGAKGPVRVNSVMVGFASALNDQDARNVAAYYGSQSAKPGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGI
PVQYPRLSGQWADYTVAQLTAFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22407; Mature: 22407

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLSKSLVVLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
FPKLAGQHPDYLVKQLHDFKTQPGAKGPVRVNSVMVGFASALNDQDARNVAAYYGSQSAK
CCHHCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
PGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSGQWADYTVAQLT
CCCCCCCCCCCCCHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH
HHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRLSKSLVVLQFAVAGLAGFMAEARAADAAKPDLDRGKAIATQVCAACHGVDGNSATGS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
FPKLAGQHPDYLVKQLHDFKTQPGAKGPVRVNSVMVGFASALNDQDARNVAAYYGSQSAK
CCHHCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
PGAARNAATVPVGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSGQWADYTVAQLT
CCCCCCCCCCCCCHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AFQQGTRSNDAMHQIALRLTDSEVKAVADYIAGLH
HHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7619830; 6089759 [H]