| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is hsdM [C]
Identifier: 53720725
GI number: 53720725
Start: 3722117
End: 3724717
Strand: Reverse
Name: hsdM [C]
Synonym: BPSL3118
Alternate gene names: 53720725
Gene position: 3724717-3722117 (Counterclockwise)
Preceding gene: 53720726
Following gene: 53720717
Centisome position: 91.41
GC content: 54.48
Gene sequence:
>2601_bases ATGTCAAAGTCTGCCAACGAGACCGAAACAGTCATCAAGCGCATCCTGCCCTATTTACAGCGTCGGGGCTATGAGATTGA GACAGATCTCCATTTCGAGACCGCTGCTTCCACTCCGGAAAGATATGAAGCGGGCTTCGTTGACATCTTGGTCTGGCCGA ACGACAAGACCTATCCGAAGGGCAAACCCGCTTTCCTGATCGAAGCGAAGCGCATTGCCAAGAAGCTATCGGAGCAAGAT AAAAAGCAAGCGCTTTCTTACGCTCGTGCCGACGGCTACGACGTTCCGTTTGTGGTCGTCTGCAATGGCGCAGAGATTCG ATCCTATAACGCGAAGACCGGCGAGCCGATTCAGTGGAACGGCAAACTTTCCTCGAAGATTCCGGCCAAGAGTCAGTTGA AGTCTGTGCTCAAGGACTTCAAGACAGATCCGCAGGCAGTTCGAATCGAACTGCCCGGGGAGGATGGTCCCCTTGACGGG TCATCCGCGCTGCCTTTCCGCCCGAGCCTTCCGTTGCGACAACTCAACGCCCTGTTCTCCAGGTGCCATGATGCTATTCG GAAGAATGAAAAAGACGAGAACCACATCTTCGACGATTTTTCCAAACTGCTGTTTCTCAAGCTGCTAGAGGAAAAGGCCG ATACCGAGGAAGGGTTCAATTTGCCTTACAGCTACACCTTCCACGAACTCGCGGCGTTGCCCGACGCTAAGGCAGATCAG GTCCAGAACGCAATCATGGACATGATCAAAAAAATTCGGACCGACAAGTCGTACGGGGACGTATTGGCGAATCCGATCCA CCTGAAAGTGGCGAAGACGTTTCTGTACCTGGTTCGTCAGCTCGCAGCGGTTTCGTTCACTGACAGCACGACGGACTCCA AGGGGGCGGCATTCGAGTACTTCGTTCGGGCGACCCTCAAGGGGAAGAAGCTGGGGCAATACTTTACGCCTAGGCCCCTG GTTCGCCTCATGTCAGCAATTGTGGGGCAAGAGAAGATCGTCAATGCACTGCTTTCGGGGGCTGCGGCCCCTAAGGTCCT GGACCCCGCGTGCGGCACCGGCGGCTTCTTGGTGTACCTCATGGGGGATAGCCTCAGGGTCGCGAATCAGAAGCTTGCCG ACCGAGCGATTAATGCCGCCACCCATCGCGAACTCGTTCGGAAGATTCGTCAGCAGGTCTTTTTTGGCTCCGACGCAAAT GAGGGCGTTGCATGTGCGGCGAAGATGAACATGATCGTCGCCGGTGACGGGCATTCAAATATTCAGCCCGAGAACAGCTT GGCACGGACGGCCAAGAACTGGAACATTCAAGATTCAGATTGCGACTTCATCTTGACTAACCCGCCGTTCGGGACGTCTG AGAGCGGGGCCTTGTCTGATAAAGACATGGGGCAGTTCGAAGTCCAGACGACGAAGGGACAACTCCTTTTCTTGCAGAAG ATGGTGTTGTCTGCTCGTCGTGGCGGGGAGATCTGCACCGTCATTGATGAGGGGGTGCTCAATACTGATACGGCGGCACC GATACGCAAATGGCTCCTGAGCAAAGCGAAGCTTTTGGCAGTGGTGCGTTTGCCTGACGAGACATTCCGTCCGAACAAAA TCAATGTTCGATCGAGCGTGCTTTACCTCCAGCGAATGACCGAGGAGGAGGAGGAAATCGCCGACGATATCAAGTATCCG GTTGCATTCTGCGATATCGAGACCTTCGGCATGGATGGGGCGGGGGATATTGCCCGCAACTTTGACTTGGATACTTTGAT TGATTCGGTCGGAAAGAACATCTTGCGAACTGGACGCACACGGAGCGGAAAACATTGGTCTGTCTTCGATGTTGCCGTTT TGATGATTCGGGACGACAAGGCATCCCGATTCGACGTGAAGTATTGGCGGCCGGGCGTAACCAATGCGATGAAAGAGATC GTTTCCGTCGGCGGAAAGACAATCAAAGAGTTGAACACGATCCCGACCGCACGTGGGACGAGTCCCAGCGCCGATTCATA TGTTGATGCGGCCGATGGCTACGCGTTGGTGATCAAGTCAGGTAGCAACATCTCGCGTTATGGCGAACTCATAGTCGACG GCGATTACATCGAGAAGAGCTTGTTTGATGAGTACGTTGAAAAAGCACATACGCAAGGCCGCAATTTCAACTTGGTCAGG CCGGGAGACGTACTCGTATCATCGACCGGTGACGGAACGCTCGGTAAGTGCTGTGTGTACCGGCCTTCGACTGACCCAAT CACTGGCGAGACCGTGCCCTACGCAGCAATAGCGGAAGGCCACGTGGCGATCATTCGTGTTGATCCTGACGTTATCTGGC CAGAGTACCTTTGTGACTATCTGAGAGTGGGTTTCGGGGCACAACAGATCGAGAGGCTCTATACCGGCTCAACGGGGATG ATCGAACTTACCCCCGCCGCACTGGATGAAGTGGTAGTGAACTTGCTTTCAGGAATCGAGGAGCAGAAGAAATACTCCGA AGCCCTACGGAAGGGCGAGGCACAAGCGCGCTCTACGTCGGAGCAAGCAGCGAGCGAAATGAGTGCTGCCCTCGACTCCT TCCGAAGCAGCACCAGCACTTTGTTGGAGCTGACGACCTAA
Upstream 100 bases:
>100_bases CTACAAACTCGGCCGTGTTCTACAATCAGCCGGGGTTGCAGGCATGGGATGGCGGTCGATCTCCGACCGCTGACCGGGCC GTGAGAGGGTTGATAGAAGA
Downstream 100 bases:
>100_bases CCCGGTAATTCACCTGGTCGGACTAACGCGCCGACCCCGTTTGCGGACGTAGTGCTCGGTCATAGCTACACTGCCGTGAC CGAGCAAAGATTGCGCGCCA
Product: putative restriction modification system methylase
Products: NA
Alternate protein names: M.BthVORF4518P [H]
Number of amino acids: Translated: 866; Mature: 865
Protein sequence:
>866_residues MSKSANETETVIKRILPYLQRRGYEIETDLHFETAASTPERYEAGFVDILVWPNDKTYPKGKPAFLIEAKRIAKKLSEQD KKQALSYARADGYDVPFVVVCNGAEIRSYNAKTGEPIQWNGKLSSKIPAKSQLKSVLKDFKTDPQAVRIELPGEDGPLDG SSALPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFHELAALPDAKADQ VQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAAVSFTDSTTDSKGAAFEYFVRATLKGKKLGQYFTPRPL VRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDAN EGVACAAKMNMIVAGDGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGALSDKDMGQFEVQTTKGQLLFLQK MVLSARRGGEICTVIDEGVLNTDTAAPIRKWLLSKAKLLAVVRLPDETFRPNKINVRSSVLYLQRMTEEEEEIADDIKYP VAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRTRSGKHWSVFDVAVLMIRDDKASRFDVKYWRPGVTNAMKEI VSVGGKTIKELNTIPTARGTSPSADSYVDAADGYALVIKSGSNISRYGELIVDGDYIEKSLFDEYVEKAHTQGRNFNLVR PGDVLVSSTGDGTLGKCCVYRPSTDPITGETVPYAAIAEGHVAIIRVDPDVIWPEYLCDYLRVGFGAQQIERLYTGSTGM IELTPAALDEVVVNLLSGIEEQKKYSEALRKGEAQARSTSEQAASEMSAALDSFRSSTSTLLELTT
Sequences:
>Translated_866_residues MSKSANETETVIKRILPYLQRRGYEIETDLHFETAASTPERYEAGFVDILVWPNDKTYPKGKPAFLIEAKRIAKKLSEQD KKQALSYARADGYDVPFVVVCNGAEIRSYNAKTGEPIQWNGKLSSKIPAKSQLKSVLKDFKTDPQAVRIELPGEDGPLDG SSALPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFHELAALPDAKADQ VQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAAVSFTDSTTDSKGAAFEYFVRATLKGKKLGQYFTPRPL VRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDAN EGVACAAKMNMIVAGDGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGALSDKDMGQFEVQTTKGQLLFLQK MVLSARRGGEICTVIDEGVLNTDTAAPIRKWLLSKAKLLAVVRLPDETFRPNKINVRSSVLYLQRMTEEEEEIADDIKYP VAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRTRSGKHWSVFDVAVLMIRDDKASRFDVKYWRPGVTNAMKEI VSVGGKTIKELNTIPTARGTSPSADSYVDAADGYALVIKSGSNISRYGELIVDGDYIEKSLFDEYVEKAHTQGRNFNLVR PGDVLVSSTGDGTLGKCCVYRPSTDPITGETVPYAAIAEGHVAIIRVDPDVIWPEYLCDYLRVGFGAQQIERLYTGSTGM IELTPAALDEVVVNLLSGIEEQKKYSEALRKGEAQARSTSEQAASEMSAALDSFRSSTSTLLELTT >Mature_865_residues SKSANETETVIKRILPYLQRRGYEIETDLHFETAASTPERYEAGFVDILVWPNDKTYPKGKPAFLIEAKRIAKKLSEQDK KQALSYARADGYDVPFVVVCNGAEIRSYNAKTGEPIQWNGKLSSKIPAKSQLKSVLKDFKTDPQAVRIELPGEDGPLDGS SALPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFHELAALPDAKADQV QNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAAVSFTDSTTDSKGAAFEYFVRATLKGKKLGQYFTPRPLV RLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDANE GVACAAKMNMIVAGDGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGALSDKDMGQFEVQTTKGQLLFLQKM VLSARRGGEICTVIDEGVLNTDTAAPIRKWLLSKAKLLAVVRLPDETFRPNKINVRSSVLYLQRMTEEEEEIADDIKYPV AFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRTRSGKHWSVFDVAVLMIRDDKASRFDVKYWRPGVTNAMKEIV SVGGKTIKELNTIPTARGTSPSADSYVDAADGYALVIKSGSNISRYGELIVDGDYIEKSLFDEYVEKAHTQGRNFNLVRP GDVLVSSTGDGTLGKCCVYRPSTDPITGETVPYAAIAEGHVAIIRVDPDVIWPEYLCDYLRVGFGAQQIERLYTGSTGMI ELTPAALDEVVVNLLSGIEEQKKYSEALRKGEAQARSTSEQAASEMSAALDSFRSSTSTLLELTT
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=421, Percent_Identity=24.2280285035629, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 95571; Mature: 95439
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSANETETVIKRILPYLQRRGYEIETDLHFETAASTPERYEAGFVDILVWPNDKTYPK CCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCHHHCCCEEEEEECCCCCCCCC GKPAFLIEAKRIAKKLSEQDKKQALSYARADGYDVPFVVVCNGAEIRSYNAKTGEPIQWN CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCEEEC GKLSSKIPAKSQLKSVLKDFKTDPQAVRIELPGEDGPLDGSSALPFRPSLPLRQLNALFS CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH RCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFHELAALPDAKADQ HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHH VQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAAVSFTDSTTDSKGAAFEY HHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH FVRATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYL HHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE MGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDANEGVACAAKMNMIVAGDGHSN ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCC IQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGALSDKDMGQFEVQTTKGQLLFLQK CCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH MVLSARRGGEICTVIDEGVLNTDTAAPIRKWLLSKAKLLAVVRLPDETFRPNKINVRSSV HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCEECHHHHH LYLQRMTEEEEEIADDIKYPVAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRT HHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCC RSGKHWSVFDVAVLMIRDDKASRFDVKYWRPGVTNAMKEIVSVGGKTIKELNTIPTARGT CCCCCEEHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCC SPSADSYVDAADGYALVIKSGSNISRYGELIVDGDYIEKSLFDEYVEKAHTQGRNFNLVR CCCCCCCEECCCCEEEEEECCCCHHHHCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEC PGDVLVSSTGDGTLGKCCVYRPSTDPITGETVPYAAIAEGHVAIIRVDPDVIWPEYLCDY CCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCHHHHHHH LRVGFGAQQIERLYTGSTGMIELTPAALDEVVVNLLSGIEEQKKYSEALRKGEAQARSTS HHHCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHH EQAASEMSAALDSFRSSTSTLLELTT HHHHHHHHHHHHHHHCCCCCEEEECC >Mature Secondary Structure SKSANETETVIKRILPYLQRRGYEIETDLHFETAASTPERYEAGFVDILVWPNDKTYPK CCCCHHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCHHHCCCEEEEEECCCCCCCCC GKPAFLIEAKRIAKKLSEQDKKQALSYARADGYDVPFVVVCNGAEIRSYNAKTGEPIQWN CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCEEEC GKLSSKIPAKSQLKSVLKDFKTDPQAVRIELPGEDGPLDGSSALPFRPSLPLRQLNALFS CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH RCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFHELAALPDAKADQ HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHH VQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAAVSFTDSTTDSKGAAFEY HHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH FVRATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYL HHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE MGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDANEGVACAAKMNMIVAGDGHSN ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCC IQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGALSDKDMGQFEVQTTKGQLLFLQK CCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH MVLSARRGGEICTVIDEGVLNTDTAAPIRKWLLSKAKLLAVVRLPDETFRPNKINVRSSV HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCEECHHHHH LYLQRMTEEEEEIADDIKYPVAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRT HHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCC RSGKHWSVFDVAVLMIRDDKASRFDVKYWRPGVTNAMKEIVSVGGKTIKELNTIPTARGT CCCCCEEHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCC SPSADSYVDAADGYALVIKSGSNISRYGELIVDGDYIEKSLFDEYVEKAHTQGRNFNLVR CCCCCCCEECCCCEEEEEECCCCHHHHCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEC PGDVLVSSTGDGTLGKCCVYRPSTDPITGETVPYAAIAEGHVAIIRVDPDVIWPEYLCDY CCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCHHHHHHH LRVGFGAQQIERLYTGSTGMIELTPAALDEVVVNLLSGIEEQKKYSEALRKGEAQARSTS HHHCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHH EQAASEMSAALDSFRSSTSTLLELTT HHHHHHHHHHHHHHHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12663928 [H]