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The map label for this gene is yfdE [H]

Identifier: 53719938

GI number: 53719938

Start: 2813906

End: 2815288

Strand: Reverse

Name: yfdE [H]

Synonym: BPSL2328

Alternate gene names: 53719938

Gene position: 2815288-2813906 (Counterclockwise)

Preceding gene: 53719939

Following gene: 53719937

Centisome position: 69.09

GC content: 70.64

Gene sequence:

>1383_bases
GTGCCGCCGGGAACGGCGATCGCCGACGCGACGGCCACGGCGTCCGATGCGCGCACGGCGTTCGCCGCAAATACCAAAGA
CGCCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACGCCAAAGACACCACATCCCGCCCGTCCCTCGCCG
CCGCGAATCATGCAACCGGGCCTGTCCGCCCTGGCGCGCTCGCCGGCCTGAAAATCATCGACCTGAGCCGCGTCCTCGGC
GGCCCGTACTGCACGCAGGCGCTCGCGGACCACGGCGCGCGCGTGATCAAGATCGAGCCGCCGGCGGGCGACGAAACGCG
CGGCTGGGGCCCGCCGTTCCTCGACGACGACGCGTGGTATTTCACCGGCGTGAATCGCAACAAGGAAGGGATCGTGCTCG
ACTTGTCGCGCGACGAAGGCCGCGCGATCCTCTGGCGTCTGCTCGAAGACGCGGACGTGCTTGTCGAAAACTTCAAGCCC
GGCACGCTCGCGCGCTGGGGGATGGACTACGAGCGGGACTTGCGGCCGCGCTTTGCGCGCCTCGTCCATTGCGCGATCAC
GGGTTTCGGCGCCGACGGCCCGCTCGGCGGGCTGCCCGGCTACGATGCGGTGATCCAGGCGATGGCGGGCCTCATGAGCG
TGAATGGCGATGCCGGTGGCGACGCGACGCGCATCGGCCTGCCGATCGTCGACATGGTGACGGGCCTGAACGCGCTCGCC
GGCATCCTGCTCGCGCTCGCCGAGCGCGAGAGAAGCGGCGTGGGCCAGTCGATCGACATCGCGCTGTACGACTGCGGCGT
GTCGCTGCTGCATCCGCACCTGCCGAACTGGTTCGGCTCGGGGCGCACCCCCGCGCGCAGCGGCAACGCGCATCCGAACA
TCGCACCGTACGACAGCTACCGCACCGCGAGCGCGCCGATCTTTCTCGCGATTGGCAACGACCGGCAGTTCGCGCGGCTT
TGCGCACACCTTGGCGTGCCCGCGCTCGCGAGCGATCCGCGTTTTATCGACAACCGCAGCCGCTGCGCGCATCGCGCCGA
GCTGAAGGCGAGCCTCGAGACGCGGCTCGCCGGCCGCGATGGCGAGACGCTCGCGCGCGAGCTGATGGCCGAGGGCGTGC
CGTGCGGGCCGGTGCGCACGATCGATGCGCTCGCGTGCGATCCGCACACGCTGCATCGCGGGCTCGTCGTCGAGATGGGG
CGATACCGCGGCGCGGCGTCGCCGATCAAGCTCTCGCGCACGCCCGCGACGTACCGCACCGCGCCGCCCACGCTCGGCCG
CGATACGCGCGCGGTGCTCGACGCGCTCGGCATCGATGCGGCGACGCAGGCGCGGCTCGCCGACGCGGGCGTGCTCAAGG
AGGCGAAACCAATGGCGACGTGA

Upstream 100 bases:

>100_bases
GAGCGATGCGGCAGGGGCGGCCGGCACCGCCGGCGCGTTCGCGGACGCGGCGCATCCGTTGCCGCCGGCGGGCGGGCTTT
GCATGTCGTCCGAGGGGGGC

Downstream 100 bases:

>100_bases
GCGAACGGCCGCGGCCCGCCGACGCGAAGCGGCGGCCGCGGCTCGAGGGTGCCGCCGGGTGCGCGCGCGGCCGGACGTCC
GGAAGGCGTGCGATCCGTCT

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MPPGTAIADATATASDARTAFAANTKDAKDAKDAKDAKDAKDAKDTTSRPSLAAANHATGPVRPGALAGLKIIDLSRVLG
GPYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVENFKP
GTLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGLNALA
GILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQFARL
CAHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLVVEMG
RYRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT

Sequences:

>Translated_460_residues
MPPGTAIADATATASDARTAFAANTKDAKDAKDAKDAKDAKDAKDTTSRPSLAAANHATGPVRPGALAGLKIIDLSRVLG
GPYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVENFKP
GTLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGLNALA
GILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQFARL
CAHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLVVEMG
RYRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT
>Mature_459_residues
PPGTAIADATATASDARTAFAANTKDAKDAKDAKDAKDAKDAKDTTSRPSLAAANHATGPVRPGALAGLKIIDLSRVLGG
PYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWYFTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVENFKPG
TLARWGMDYERDLRPRFARLVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGLNALAG
ILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSYRTASAPIFLAIGNDRQFARLC
AHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRDGETLARELMAEGVPCGPVRTIDALACDPHTLHRGLVVEMGR
YRGAASPIKLSRTPATYRTAPPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=35.6962025316456, Blast_Score=252, Evalue=7e-67,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=33.4916864608076, Blast_Score=237, Evalue=1e-62,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=31.8987341772152, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=30.166270783848, Blast_Score=202, Evalue=7e-52,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=27.2277227722772, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=27.6119402985075, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI266458397, Length=263, Percent_Identity=31.9391634980989, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=31.9391634980989, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=31.7241379310345, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=32.6530612244898, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=38.4615384615385, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI1788717, Length=402, Percent_Identity=31.3432835820896, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=26.302729528536, Blast_Score=108, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=253, Percent_Identity=27.6679841897233, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32564160, Length=333, Percent_Identity=24.3243243243243, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=40.1515151515151, Blast_Score=270, Evalue=1e-72,
Organism=Drosophila melanogaster, GI24585488, Length=199, Percent_Identity=29.1457286432161, Blast_Score=82, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 48610; Mature: 48478

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPGTAIADATATASDARTAFAANTKDAKDAKDAKDAKDAKDAKDTTSRPSLAAANHATG
CCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC
PVRPGALAGLKIIDLSRVLGGPYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWY
CCCCCHHHCEEEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
FTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVENFKPGTLARWGMDYERDLRPRFAR
EECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHH
LVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGLNALA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHH
GILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSY
HHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTASAPIFLAIGNDRQFARLCAHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRD
CCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCC
GETLARELMAEGVPCGPVRTIDALACDPHTLHRGLVVEMGRYRGAASPIKLSRTPATYRT
HHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
APPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PPGTAIADATATASDARTAFAANTKDAKDAKDAKDAKDAKDAKDTTSRPSLAAANHATG
CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC
PVRPGALAGLKIIDLSRVLGGPYCTQALADHGARVIKIEPPAGDETRGWGPPFLDDDAWY
CCCCCHHHCEEEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
FTGVNRNKEGIVLDLSRDEGRAILWRLLEDADVLVENFKPGTLARWGMDYERDLRPRFAR
EECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHH
LVHCAITGFGADGPLGGLPGYDAVIQAMAGLMSVNGDAGGDATRIGLPIVDMVTGLNALA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHH
GILLALAERERSGVGQSIDIALYDCGVSLLHPHLPNWFGSGRTPARSGNAHPNIAPYDSY
HHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTASAPIFLAIGNDRQFARLCAHLGVPALASDPRFIDNRSRCAHRAELKASLETRLAGRD
CCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCC
GETLARELMAEGVPCGPVRTIDALACDPHTLHRGLVVEMGRYRGAASPIKLSRTPATYRT
HHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
APPTLGRDTRAVLDALGIDAATQARLADAGVLKEAKPMAT
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]