| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is comA [H]
Identifier: 53719884
GI number: 53719884
Start: 2738754
End: 2741324
Strand: Reverse
Name: comA [H]
Synonym: BPSL2274
Alternate gene names: 53719884
Gene position: 2741324-2738754 (Counterclockwise)
Preceding gene: 53719885
Following gene: 53719883
Centisome position: 67.28
GC content: 76.23
Gene sequence:
>2571_bases ATGGACATGCGCCGCTCGGGCGGCGCGCAAGGCGGAGGCGCGATGCGGGCGAAGTGCGGCGCGTTCGCGCTCGGCGTGGT CGCGCTGCAGCAGCAGGCGGCGTTGCCGGGCGCGGCGGCATGGGCGGGCGGTGCGCTCGCGTTCGGCTTGTGCGTGTGGC TCGCGCTCGTGTGGCGCGGCGATGCGCGCGCGCGAGCAGCCGGGTTCTGCGCATGCTGCTGCGCGGCGGCGCTCGCGGGC TTCGGCTACGCCGCGGCGCGCGCGCAGTGGCGGCTCGCCGATACGCTGCCCGCGCAGTGGGAAGGGCGCGACATCGTCGT GACGGGCGCCGTGCGCGGGCTGCCGTCGCGCGACGCGAACGGCGTGCGTTTCCTGTTCGACGTCGACGCAAACGATGCGC GCATTGCACGTTTTCCGGCGACGCTGTCGCTTGGCTGGTACGCGTTCGGCCGCCCGGGCGCGCAGCCGCCCGAACTCGTG CCGGGCGACCGGTGGCGGCTGCGCGTGCGTCTGAAACGCCCGCACGGCAATGCGAATTTCGGCGTGCGCGACGCGGAGGC GGCGTGGCTCGCGCGCGGCATCCGGGCGCTCGGCTACGTGTCGGCGCCGCGCGATGCGCGGCGGCTCGCGGGGCGTGCAT CCGGCGTCGCGGCCGCGCTCGACCGGCTGCGCGCGCGGCTGCGCGGGCGCATCGCCGAGGCGCTCGGCGACGCCGCGCAT CGCGGGATCGTCGTCGCGCTCGCGATCGGCGCGCAGGACGATATCGCCGACGACGACCGGCGCATCCTGCGCGATACCGG CACGAGCCATCTCGTCGCGATTTCCGGGCTGCACGTCGGGATGGTCGGGGGCCTGTGCGCGTGGCTCGCGGGCGGGCTCT GGCGGCGCTCGGGCTACGTCGGACGCGACTGGCCGCTCGTCGTGCCCGCGCAGAAAGTCGCGGCGCTCGGCGCGATCGTC GGCGGCGCCGGCTATGCGGCGCTCGCGGGCTTCAACGTGCCCGTGCAGCGCGCGTGGTGGATGCTTGCCGCCGCGGGCGT CGCGTATCTGAGCGCTCGCTCGCTCGCGCCTTCGTCGGTGCTGGCGGCCGCGCTCGGCTGCGTGCTGCTCGTCGATCCGT GGGCGGTGACGTCGGCGGGGTTCTGGCTGTCGTTCTGCGCGGTCGCGGCGATCCTGGCCGTATCGTCGGGGTGGCGCGCC CCGCGCGATCTCGACGAGACGCGCGGCGCGCGCCACGCGCTCGGCGGCGTGGGTCACGAAGGCGCGCCGCCGTCGCATCG CGCGCGGTGGCGCGCCGCGTGCGGATTCGCGTGGGGGTGGGCGGCGCGCGCGTTCGGCCGGCTCGCCCGGCGCGTGCGCG ATGCCGCGCGGGCGCAGTTCGCGGTGACGATCGCGCTCGCGCCGCTCACCGTGCTCTGGTTCGCGCAGATCCCGCTCGCC GGCCCGCTCGCGAACGCGTTCGCGATTCCGTGGGTCGGCTCGCTCGTCACGCCGATCGTGCTCGCGGGCATCGTGTTGCC GGCGCCGCTCGACGCGTCCGCATACGCGCTCGCGCATGCACTCGTTCAGGCGCTGATGCGGCTGCTCGACGCGACGGCCG GCGCGGGGCGCACGGTCTGGATGCTGCCGGCGCCGGACGGCTTCGCGCTCGCCGCGGCGGCGGTGGGCGTCGCGTGGGCG TTGATGCCGCGCGGCTGGCCGGTGCGCTGCGCGGCGCCGCTCGCGTGGCTGCCGCTCGTCGCGCCGGCGCCGCTTGCGCC GCCCGACGGCGCGTTCAGGCTGACGGCGCTCGACGTCGGGCAGGGCTCCGCGGTGCTGATCGAGACCGCGCGGCACACGC TGCTGTTCGACGCGGGCCCGGGGCCGGAGGCGTCGAACGCGGGCGAGCGGATCGTCGTGCCGTTCTTGCGCGCGCGAGGC GTGCGCGCGCTCGACGCGCTCGTCGTGAGCCACGCGGATTCGGATCACGCGGGCGGCGCACCCGCAGTACTCGGATCGAT CGCCGTCGCGCAGATGGCGGGCGGGCTGCCGCCGTCGAACCGCCTGTGGCGCGCCGCGCGCGCGGCCGGCGTGGCCGACG CGCTGCCGTGCGTGGCGGGGCAGCGCTGGCGCTGGGACGGCGTCGAGTTCGACGCGCTATGGCCGGCCGGCGGCCCGCGC GCGGGCGGCGCGACGAACGCGCAGTCGTGCGTGCTGCGCGTATCGGCGGGCGGGCGCGCGGCGCTCCTGACGGGCGATGT CGATGCGCGCTCCGAGCGCGCGCTCGTCGCCGGATCGCGCGGCGCGCTCGCCGCGCAGGTGCTCGTCGTGCCGCACCACG GCAGCCGCACGTCGTCGACTGAGCCTTTCCTCGATTCGGTCAAACCGCGCATTGCAATATTTCAGGTAGGCTACGCCAAC AGGTTTCACCATCCGCATCCGACCGTCTGGGCGCGCTATGCCGGGCGCGGCATCGAGTTGCCGCGCACCGACCGCGACGG CGCCGTGCGCGTCGACGTGACATCGAGCGGCGCGCTTGCCGAGCCGGTGCGGTATCGGGACGCGCACCGGCGCTACTGGA TGGGCCGTTGA
Upstream 100 bases:
>100_bases CTGCGCGGCATCGGCGTCGATGCGCTTTCCCTATCCACTTCGGCCAACGCGCTCGCCGCGCTGCCGCGGCTCGCGCTTTC GTCCGCATAATCGGTTCGTC
Downstream 100 bases:
>100_bases CGCGATGCGGAGGCTACGACAGGGAGACAGCGTCGTTTGAAGGACATCATCCATTTCTCGCATGCGAACGGCTTTCCGGC GTCCACGTATCGGACGATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 856
Protein sequence:
>856_residues MDMRRSGGAQGGGAMRAKCGAFALGVVALQQQAALPGAAAWAGGALAFGLCVWLALVWRGDARARAAGFCACCCAAALAG FGYAAARAQWRLADTLPAQWEGRDIVVTGAVRGLPSRDANGVRFLFDVDANDARIARFPATLSLGWYAFGRPGAQPPELV PGDRWRLRVRLKRPHGNANFGVRDAEAAWLARGIRALGYVSAPRDARRLAGRASGVAAALDRLRARLRGRIAEALGDAAH RGIVVALAIGAQDDIADDDRRILRDTGTSHLVAISGLHVGMVGGLCAWLAGGLWRRSGYVGRDWPLVVPAQKVAALGAIV GGAGYAALAGFNVPVQRAWWMLAAAGVAYLSARSLAPSSVLAAALGCVLLVDPWAVTSAGFWLSFCAVAAILAVSSGWRA PRDLDETRGARHALGGVGHEGAPPSHRARWRAACGFAWGWAARAFGRLARRVRDAARAQFAVTIALAPLTVLWFAQIPLA GPLANAFAIPWVGSLVTPIVLAGIVLPAPLDASAYALAHALVQALMRLLDATAGAGRTVWMLPAPDGFALAAAAVGVAWA LMPRGWPVRCAAPLAWLPLVAPAPLAPPDGAFRLTALDVGQGSAVLIETARHTLLFDAGPGPEASNAGERIVVPFLRARG VRALDALVVSHADSDHAGGAPAVLGSIAVAQMAGGLPPSNRLWRAARAAGVADALPCVAGQRWRWDGVEFDALWPAGGPR AGGATNAQSCVLRVSAGGRAALLTGDVDARSERALVAGSRGALAAQVLVVPHHGSRTSSTEPFLDSVKPRIAIFQVGYAN RFHHPHPTVWARYAGRGIELPRTDRDGAVRVDVTSSGALAEPVRYRDAHRRYWMGR
Sequences:
>Translated_856_residues MDMRRSGGAQGGGAMRAKCGAFALGVVALQQQAALPGAAAWAGGALAFGLCVWLALVWRGDARARAAGFCACCCAAALAG FGYAAARAQWRLADTLPAQWEGRDIVVTGAVRGLPSRDANGVRFLFDVDANDARIARFPATLSLGWYAFGRPGAQPPELV PGDRWRLRVRLKRPHGNANFGVRDAEAAWLARGIRALGYVSAPRDARRLAGRASGVAAALDRLRARLRGRIAEALGDAAH RGIVVALAIGAQDDIADDDRRILRDTGTSHLVAISGLHVGMVGGLCAWLAGGLWRRSGYVGRDWPLVVPAQKVAALGAIV GGAGYAALAGFNVPVQRAWWMLAAAGVAYLSARSLAPSSVLAAALGCVLLVDPWAVTSAGFWLSFCAVAAILAVSSGWRA PRDLDETRGARHALGGVGHEGAPPSHRARWRAACGFAWGWAARAFGRLARRVRDAARAQFAVTIALAPLTVLWFAQIPLA GPLANAFAIPWVGSLVTPIVLAGIVLPAPLDASAYALAHALVQALMRLLDATAGAGRTVWMLPAPDGFALAAAAVGVAWA LMPRGWPVRCAAPLAWLPLVAPAPLAPPDGAFRLTALDVGQGSAVLIETARHTLLFDAGPGPEASNAGERIVVPFLRARG VRALDALVVSHADSDHAGGAPAVLGSIAVAQMAGGLPPSNRLWRAARAAGVADALPCVAGQRWRWDGVEFDALWPAGGPR AGGATNAQSCVLRVSAGGRAALLTGDVDARSERALVAGSRGALAAQVLVVPHHGSRTSSTEPFLDSVKPRIAIFQVGYAN RFHHPHPTVWARYAGRGIELPRTDRDGAVRVDVTSSGALAEPVRYRDAHRRYWMGR >Mature_856_residues MDMRRSGGAQGGGAMRAKCGAFALGVVALQQQAALPGAAAWAGGALAFGLCVWLALVWRGDARARAAGFCACCCAAALAG FGYAAARAQWRLADTLPAQWEGRDIVVTGAVRGLPSRDANGVRFLFDVDANDARIARFPATLSLGWYAFGRPGAQPPELV PGDRWRLRVRLKRPHGNANFGVRDAEAAWLARGIRALGYVSAPRDARRLAGRASGVAAALDRLRARLRGRIAEALGDAAH RGIVVALAIGAQDDIADDDRRILRDTGTSHLVAISGLHVGMVGGLCAWLAGGLWRRSGYVGRDWPLVVPAQKVAALGAIV GGAGYAALAGFNVPVQRAWWMLAAAGVAYLSARSLAPSSVLAAALGCVLLVDPWAVTSAGFWLSFCAVAAILAVSSGWRA PRDLDETRGARHALGGVGHEGAPPSHRARWRAACGFAWGWAARAFGRLARRVRDAARAQFAVTIALAPLTVLWFAQIPLA GPLANAFAIPWVGSLVTPIVLAGIVLPAPLDASAYALAHALVQALMRLLDATAGAGRTVWMLPAPDGFALAAAAVGVAWA LMPRGWPVRCAAPLAWLPLVAPAPLAPPDGAFRLTALDVGQGSAVLIETARHTLLFDAGPGPEASNAGERIVVPFLRARG VRALDALVVSHADSDHAGGAPAVLGSIAVAQMAGGLPPSNRLWRAARAAGVADALPCVAGQRWRWDGVEFDALWPAGGPR AGGATNAQSCVLRVSAGGRAALLTGDVDARSERALVAGSRGALAAQVLVVPHHGSRTSSTEPFLDSVKPRIAIFQVGYAN RFHHPHPTVWARYAGRGIELPRTDRDGAVRVDVTSSGALAEPVRYRDAHRRYWMGR
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=714, Percent_Identity=27.03081232493, Blast_Score=204, Evalue=2e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 89318; Mature: 89318
Theoretical pI: Translated: 11.45; Mature: 11.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMRRSGGAQGGGAMRAKCGAFALGVVALQQQAALPGAAAWAGGALAFGLCVWLALVWRG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHCC DARARAAGFCACCCAAALAGFGYAAARAQWRLADTLPAQWEGRDIVVTGAVRGLPSRDAN CCHHHHHHHHHHHHHHHHHHCCHHHHHCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCC GVRFLFDVDANDARIARFPATLSLGWYAFGRPGAQPPELVPGDRWRLRVRLKRPHGNANF CEEEEEEECCCCCEEEECCCEEEECEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCC GVRDAEAAWLARGIRALGYVSAPRDARRLAGRASGVAAALDRLRARLRGRIAEALGDAAH CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC RGIVVALAIGAQDDIADDDRRILRDTGTSHLVAISGLHVGMVGGLCAWLAGGLWRRSGYV CCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCHHHHCCCCC GRDWPLVVPAQKVAALGAIVGGAGYAALAGFNVPVQRAWWMLAAAGVAYLSARSLAPSSV CCCCCEEECHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH LAAALGCVLLVDPWAVTSAGFWLSFCAVAAILAVSSGWRAPRDLDETRGARHALGGVGHE HHHHHCHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHCCCCCC GAPPSHRARWRAACGFAWGWAARAFGRLARRVRDAARAQFAVTIALAPLTVLWFAQIPLA CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCC GPLANAFAIPWVGSLVTPIVLAGIVLPAPLDASAYALAHALVQALMRLLDATAGAGRTVW CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE MLPAPDGFALAAAAVGVAWALMPRGWPVRCAAPLAWLPLVAPAPLAPPDGAFRLTALDVG EEECCCCHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHCCCCCCCCCCCCCEEEEEEECC QGSAVLIETARHTLLFDAGPGPEASNAGERIVVPFLRARGVRALDALVVSHADSDHAGGA CCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCCCCCC PAVLGSIAVAQMAGGLPPSNRLWRAARAAGVADALPCVAGQRWRWDGVEFDALWPAGGPR HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEECCCEEEEEECCCCCCC AGGATNAQSCVLRVSAGGRAALLTGDVDARSERALVAGSRGALAAQVLVVPHHGSRTSST CCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCC EPFLDSVKPRIAIFQVGYANRFHHPHPTVWARYAGRGIELPRTDRDGAVRVDVTSSGALA CCHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC EPVRYRDAHRRYWMGR CCHHHHHHHHHHCCCC >Mature Secondary Structure MDMRRSGGAQGGGAMRAKCGAFALGVVALQQQAALPGAAAWAGGALAFGLCVWLALVWRG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHCC DARARAAGFCACCCAAALAGFGYAAARAQWRLADTLPAQWEGRDIVVTGAVRGLPSRDAN CCHHHHHHHHHHHHHHHHHHCCHHHHHCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCC GVRFLFDVDANDARIARFPATLSLGWYAFGRPGAQPPELVPGDRWRLRVRLKRPHGNANF CEEEEEEECCCCCEEEECCCEEEECEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCC GVRDAEAAWLARGIRALGYVSAPRDARRLAGRASGVAAALDRLRARLRGRIAEALGDAAH CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC RGIVVALAIGAQDDIADDDRRILRDTGTSHLVAISGLHVGMVGGLCAWLAGGLWRRSGYV CCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCHHHHCCCCC GRDWPLVVPAQKVAALGAIVGGAGYAALAGFNVPVQRAWWMLAAAGVAYLSARSLAPSSV CCCCCEEECHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH LAAALGCVLLVDPWAVTSAGFWLSFCAVAAILAVSSGWRAPRDLDETRGARHALGGVGHE HHHHHCHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHCCCCCC GAPPSHRARWRAACGFAWGWAARAFGRLARRVRDAARAQFAVTIALAPLTVLWFAQIPLA CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCC GPLANAFAIPWVGSLVTPIVLAGIVLPAPLDASAYALAHALVQALMRLLDATAGAGRTVW CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE MLPAPDGFALAAAAVGVAWALMPRGWPVRCAAPLAWLPLVAPAPLAPPDGAFRLTALDVG EEECCCCHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHCCCCCCCCCCCCCEEEEEEECC QGSAVLIETARHTLLFDAGPGPEASNAGERIVVPFLRARGVRALDALVVSHADSDHAGGA CCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCCCCCC PAVLGSIAVAQMAGGLPPSNRLWRAARAAGVADALPCVAGQRWRWDGVEFDALWPAGGPR HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEECCCEEEEEECCCCCCC AGGATNAQSCVLRVSAGGRAALLTGDVDARSERALVAGSRGALAAQVLVVPHHGSRTSST CCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCC EPFLDSVKPRIAIFQVGYANRFHHPHPTVWARYAGRGIELPRTDRDGAVRVDVTSSGALA CCHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC EPVRYRDAHRRYWMGR CCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]