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The map label for this gene is yjjV [H]

Identifier: 53719885

GI number: 53719885

Start: 2741335

End: 2742123

Strand: Reverse

Name: yjjV [H]

Synonym: BPSL2275

Alternate gene names: 53719885

Gene position: 2742123-2741335 (Counterclockwise)

Preceding gene: 53719886

Following gene: 53719884

Centisome position: 67.3

GC content: 70.47

Gene sequence:

>789_bases
ATGTGGATCGACACGCATTGCCATCTCGATGCGCCGGAGTTCGACGCCGACCGCGAGGTCGTCGCCGGCGCGGCGCGGGC
GGCGGGCGTGTCGCGCATCGTGATTCCGAGCGTCGGGCGCACGAACTTCACGACGGTGCGCGCGCTCGCGCATGCGACGC
GCGGCGCGGTGTATGCGCTCGGCATTCATCCGATGTACACGCCGCATGCGCGCGACGAAGACCTCGACCGGCTGCGCATG
GAAGTCGAGGCGAGCCTCGACGATCCGCGCTTCGTCGGCATCGGCGAGATCGGTCTCGACTACTTCGTGCCGGGGCTCGA
CGAGCGCCGCCAGCAGTTCTTCTATGACGCGCAGCTGCGGCTCGCGCGCGAGTTCGATCTGCCTGTCGTGTGCCACGTGC
GCAAATCGCAGGATCGCGTGCTGGCCGGGCTGCGGCGCGCGGGCGTGCGGCGCGGCATCGCGCATGCGTTCAACGGCAGC
TTCCAGCAGGCCGACGCGTATCTCGCGCAAGGGCTCAAGCTCGGCTTCGGCGGCAACGTGACGTTCGAGCGCGCGCGGCA
GATCAGGCGGCTCGCCGGGCAACTGCCGCTCGACGCGCTCGTCGTCGAGACCGACGCGCCCGACATTCCCCCCGAGTGGC
GCGACAGGCAGCGCAACACGCCCGACCAGGTGCCGCGCATCGGCGCCGTGATCGCCGAGCTGCGCGGCATCGGCGTCGAT
GCGCTTTCCCTATCCACTTCGGCCAACGCGCTCGCCGCGCTGCCGCGGCTCGCGCTTTCGTCCGCATAA

Upstream 100 bases:

>100_bases
ATCGTCACGCACGATCCCGATCTCGCCGCGCGCTGCGACCGCATCCTGCGGCTGCGCGACGGCGTGCTGCACGAGGAGCC
GGCCGTGCCGGTGTGACGCG

Downstream 100 bases:

>100_bases
TCGGTTCGTCATGGACATGCGCCGCTCGGGCGGCGCGCAAGGCGGAGGCGCGATGCGGGCGAAGTGCGGCGCGTTCGCGC
TCGGCGTGGTCGCGCTGCAG

Product: putative TatD related DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDAPEFDADREVVAGAARAAGVSRIVIPSVGRTNFTTVRALAHATRGAVYALGIHPMYTPHARDEDLDRLRM
EVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLRLAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQADAYLAQGLKLGFGGNVTFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA

Sequences:

>Translated_262_residues
MWIDTHCHLDAPEFDADREVVAGAARAAGVSRIVIPSVGRTNFTTVRALAHATRGAVYALGIHPMYTPHARDEDLDRLRM
EVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLRLAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQADAYLAQGLKLGFGGNVTFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA
>Mature_262_residues
MWIDTHCHLDAPEFDADREVVAGAARAAGVSRIVIPSVGRTNFTTVRALAHATRGAVYALGIHPMYTPHARDEDLDRLRM
EVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLRLAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQADAYLAQGLKLGFGGNVTFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=30.8550185873606, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=30.2325581395349, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=30.8550185873606, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=30.0724637681159, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI226061595, Length=239, Percent_Identity=29.7071129707113, Blast_Score=81, Evalue=9e-16,
Organism=Escherichia coli, GI87082439, Length=250, Percent_Identity=39.2, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=31.3725490196078, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=26.4367816091954, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=224, Percent_Identity=26.7857142857143, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=26.978417266187, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221330018, Length=214, Percent_Identity=27.1028037383178, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24586117, Length=214, Percent_Identity=27.1028037383178, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28767; Mature: 28767

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDAPEFDADREVVAGAARAAGVSRIVIPSVGRTNFTTVRALAHATRGAVYAL
CEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCEEEEE
GIHPMYTPHARDEDLDRLRMEVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHH
LAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQADAYLAQGLKLGFGGNV
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCE
ALSLSTSANALAALPRLALSSA
EEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIDTHCHLDAPEFDADREVVAGAARAAGVSRIVIPSVGRTNFTTVRALAHATRGAVYAL
CEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCEEEEE
GIHPMYTPHARDEDLDRLRMEVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHH
LAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQADAYLAQGLKLGFGGNV
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCE
ALSLSTSANALAALPRLALSSA
EEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]