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The map label for this gene is radA [H]

Identifier: 53719787

GI number: 53719787

Start: 2614955

End: 2616331

Strand: Reverse

Name: radA [H]

Synonym: BPSL2178

Alternate gene names: 53719787

Gene position: 2616331-2614955 (Counterclockwise)

Preceding gene: 53719788

Following gene: 53719786

Centisome position: 64.21

GC content: 68.48

Gene sequence:

>1377_bases
ATGGCCAAGCAGAAGACGGTATTCGTCTGCACCGAGTGCGGCGGGCAGACGCCGAAGTGGCAGGGTCAATGCCCGTCGTG
CCACGCATGGAACACCCTCGTCGAATCGGTCGAGAGCGCGCCGTCCGCGCACCGCTTCCAGTCGCTCGCGAAGCGCGCGC
CCGTGCAGCGGCTCGCGGATATCGAGGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGACCGGGTGCTG
GGCGGCGGGCTTGTCGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGCAGATCGCGAGCGAGCGGCCGGCGCTCTATATCAGCGGGGAGGAGTCGGGCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGCGCTCCTCGAAGGCGGCGCGAGCGCGGCCGATCTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATTCAG
GCGACGATCGACGCCGAGCGGCCCGACGTCGCGGTGATCGATTCGATCCAGACGATCTATTCGGAGGCGTTGACGTCGGC
GCCCGGTTCGGTCGCGCAAGTGCGCGAATGCGCGGCGCAATTGACGCGCATCGCGAAGCAATCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAAGAGGGCAACCTCGCCGGGCCGCGCGTGCTCGAGCACATCGTCGACACCGTGCTGTACTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCGATGACCGAGCGCGGCCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACACGGAGGTCGTGCCGG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGGCCGCTGCTCGTCGAGGTGCAGGCGCTCGTCGACACCGCGAACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGTTTCGACCAGGACGTGTTCCTGAACGCGGTCGGCGGCGTGAAGATCACCGAGCCGGCCGCCGATCTGGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGTAACAAACCGTTGCCAAAGGGTCTGATCGTATTCGGCGAAGTCGGGCTCGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAACGCCTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
TAAGGCAAATGCGCCGAAACAGCCGATCGACGGGCTTCGCGTGCATGCGGTCGAGCGTATCGAACAGGCGATCGACCAGA
TTCGCGTGCTCGAATGA

Upstream 100 bases:

>100_bases
CCGATCGACGACGTCGCCGCGCGCTGCATGACGGTCGGCTACGAGCTGATGTGCGCGGTCGCGCCGCGCGTGCCCGTGCG
TGCCGAGTAAGGGCGCGCGC

Downstream 100 bases:

>100_bases
GCGCGGCGCGCGGCGGTTGCGCCCGGGCTTGCCGCCTGTCAGGCGCGGATCGGGAGCGTAAAACCATGTAACGTTTTGGT
ACGCTGATGTAACCCTTTTG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MAKQKTVFVCTECGGQTPKWQGQCPSCHAWNTLVESVESAPSAHRFQSLAKRAPVQRLADIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQIASERPALYISGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHTEVVPGSCVLVTQEGTRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQPIDGLRVHAVERIEQAIDQIRVLE

Sequences:

>Translated_458_residues
MAKQKTVFVCTECGGQTPKWQGQCPSCHAWNTLVESVESAPSAHRFQSLAKRAPVQRLADIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQIASERPALYISGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHTEVVPGSCVLVTQEGTRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQPIDGLRVHAVERIEQAIDQIRVLE
>Mature_457_residues
AKQKTVFVCTECGGQTPKWQGQCPSCHAWNTLVESVESAPSAHRFQSLAKRAPVQRLADIEAADVPRFSTGIGEFDRVLG
GGLVAGGVVLIGGDPGIGKSTLLLQSLAQIASERPALYISGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQA
TIDAERPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHTEVVPGSCVLVTQEGTRPLLVEVQALVDTANVP
NPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLAG
EIRPSPRGQERLREAAKLGFTTALIPKANAPKQPIDGLRVHAVERIEQAIDQIRVLE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=57.9520697167756, Blast_Score=532, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48745; Mature: 48614

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKTVFVCTECGGQTPKWQGQCPSCHAWNTLVESVESAPSAHRFQSLAKRAPVQRLAD
CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHC
IEAADVPRFSTGIGEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLAQIASERPALYI
CCHHCCCCHHCCHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQATIDAERPDVAVIDSIQTIY
ECCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHEEE
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHTEVVPGSCVLVT
CCCCCHHHHHHHHHHHHCCCHHHCCHHEEHHHCCCCCCCCHHEEEECCCCCCCCCEEEEE
QEGTRPLLVEVQALVDTANVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCHHEEEC
GGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
FTTALIPKANAPKQPIDGLRVHAVERIEQAIDQIRVLE
CCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKQKTVFVCTECGGQTPKWQGQCPSCHAWNTLVESVESAPSAHRFQSLAKRAPVQRLAD
CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHC
IEAADVPRFSTGIGEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLAQIASERPALYI
CCHHCCCCHHCCHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQATIDAERPDVAVIDSIQTIY
ECCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHEEE
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHTEVVPGSCVLVT
CCCCCHHHHHHHHHHHHCCCHHHCCHHEEHHHCCCCCCCCHHEEEECCCCCCCCCEEEEE
QEGTRPLLVEVQALVDTANVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCHHEEEC
GGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
FTTALIPKANAPKQPIDGLRVHAVERIEQAIDQIRVLE
CCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]