| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53719596
Identifier: 53719596
GI number: 53719596
Start: 2366590
End: 2367936
Strand: Reverse
Name: 53719596
Synonym: BPSL1984
Alternate gene names: NA
Gene position: 2367936-2366590 (Counterclockwise)
Preceding gene: 53719597
Following gene: 53719595
Centisome position: 58.12
GC content: 70.82
Gene sequence:
>1347_bases GTGACGAAGTACGTGCTGACGGCATGCTGTGCCGCAGCGACGGCGCTCGCGGCGCAGCACGCCGCCGCGCAGTCGGCTAA GAACCGGTCGGTGGCGACCGTCGACTACACGACGCGCAGCGGCGACACGCTGTACGACGTCTCGGCCCGCTATCTGCAAG GCACGGACGACTGGCCGCTCGTCGCGCAACTGAACGACGTGCCGGTGCCGAAGCATCTGCAGCCGGGCGTCGTGCTGAAG CTGCCCGCCGCGCGGCTGCGCAAGGAGCGGCTGTCGGCGCGGGTGATCGCCGCGCACGGCACGGTCGAGAGCGCGGGGCG CGGCTCCGCGCAGTTCGCGCCCGTCGCCGTCGACGCGACGCTCACGGAAGGCGACCGCCTGCGCACGGGCTCGAACGCGT TCGTCACGCTCGAGCTCTCGGACGGCACGCACCTGAGCCTGCCGCCCGACAGCCAGATCGATCTCGCGACACTGCGTCGC ACGGTGCTCACGGGCACGCTCGAGCGCGTGATCGATCTGCGCCGCGGCTCGGTCGACAGCGAAGTCACCCATCTGAAGAA GAAGGACGATCGCTTCCAGATCCGCTCGCCGTCGGTCGTCGCCGGCGTGCGCGGCACGCGCTTTCGCGTGAATTACGACA AGGATGGCCGCGCGTCGACGACGGTCGAAGTGCTCGACGGCACGGTGGGCGTCGCGCCGAGCGCGAAGCGCTCGGCCGAC ACGCTCGTGCACGCGAACTTCGGCAACGTGACGAGCGCGAGCGGCGTCGTCGGCAGCCCGATCGCGCTGCTCGACGCGCC GCAGCTCGCCAACCCGGCGAAGATCCAGGACGATCCGCAGGTCGCGTTCGACCTCGTGCCGCTCGGCGGCGCGCAAAGCT ATCACGTGCAGATCGCGCGCGACGCGGGCCTGTACGATCTCTTCAAGGAAGTGCAGGTGCCGGCGCCGCGCGCGACGTTC GCCGACGTGCCGGACGGCACCTATTTCGTCCGGATCGCGGCGATCGATTCGCACGGTCTCGAGGGCCAGCCGCGCATCTA CGCGTTCGAGCGGCGCCGCTTCGGGGTCGACGCGTCGGCCGCGCCCGCCGACGGCGGCTACGCGTTCCGCTGGTCGACGA CGCAAGACGGCGCGGCGGCCGGCGCGACGCGCTTTCGCTTCGTGCTGTCGCGCTCGAAGGACCTGAGCAACCCGATCGTC GACCAGGTCGACGCGCAGGGCGGGCGCATCGCCGTGTCGAACCTGACGCCGGGCGACTACTACTGGAGCGTGATCGCGGA GCGCTACGAAGGCGGCCGTTTCCACGAAAAGGCCAGCGCGGTCAACGCGTTCACGATCGCGCGCTGA
Upstream 100 bases:
>100_bases TGCGCCCGGAGAACGGCTACCGCCTCGCGCCGATCTACGGCTACGGCTATCGCCTCGAGCGCGTGATGCAGGGGGACGCG GAGTGAGCGCGCGCGGGTTC
Downstream 100 bases:
>100_bases TGGGCGGCGGATGAGATTCGACCGCACGCAACGGCGGCGGCTGCTCGGCCGCCGTTTTCTCGTCGAGTGGATCGCGATCG GCTGCCTCGGGGTCGCGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: LysM Domain-Containing Protein; LysM Cell Wall-Like Protein; LysM Domain-Containing; LysM Motif-Containing Protein; LysM Domain Protein
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MTKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPLVAQLNDVPVPKHLQPGVVLK LPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDATLTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRR TVLTGTLERVIDLRRGSVDSEVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIARDAGLYDLFKEVQVPAPRATF ADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASAAPADGGYAFRWSTTQDGAAAGATRFRFVLSRSKDLSNPIV DQVDAQGGRIAVSNLTPGDYYWSVIAERYEGGRFHEKASAVNAFTIAR
Sequences:
>Translated_448_residues MTKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPLVAQLNDVPVPKHLQPGVVLK LPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDATLTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRR TVLTGTLERVIDLRRGSVDSEVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIARDAGLYDLFKEVQVPAPRATF ADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASAAPADGGYAFRWSTTQDGAAAGATRFRFVLSRSKDLSNPIV DQVDAQGGRIAVSNLTPGDYYWSVIAERYEGGRFHEKASAVNAFTIAR >Mature_447_residues TKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPLVAQLNDVPVPKHLQPGVVLKL PAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDATLTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRRT VLTGTLERVIDLRRGSVDSEVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSADT LVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIARDAGLYDLFKEVQVPAPRATFA DVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASAAPADGGYAFRWSTTQDGAAAGATRFRFVLSRSKDLSNPIVD QVDAQGGRIAVSNLTPGDYYWSVIAERYEGGRFHEKASAVNAFTIAR
Specific function: Unknown
COG id: COG4254
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47918; Mature: 47787
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCHHEECCCCCCCE VAQLNDVPVPKHLQPGVVLKLPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDAT EEECCCCCCCCCCCCCEEEECCHHHHHHHHHCEEEEEECCCCCCCCCCCCEEEEEEEEEE LTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRRTVLTGTLERVIDLRRGSVDS ECCCCCEECCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH EVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD HHHHHHCCCCCEEECCCCEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIAR EEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC DAGLYDLFKEVQVPAPRATFADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASA CCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECHHCCCCCCC APADGGYAFRWSTTQDGAAAGATRFRFVLSRSKDLSNPIVDQVDAQGGRIAVSNLTPGDY CCCCCCEEEEECCCCCCCCCCHHHEEEEECCCCCCCCCHHHHHCCCCCEEEEECCCCCHH YWSVIAERYEGGRFHEKASAVNAFTIAR HHHHHHHHHCCCCHHHHHHHCCEEEECC >Mature Secondary Structure TKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCHHEECCCCCCCE VAQLNDVPVPKHLQPGVVLKLPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDAT EEECCCCCCCCCCCCCEEEECCHHHHHHHHHCEEEEEECCCCCCCCCCCCEEEEEEEEEE LTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRRTVLTGTLERVIDLRRGSVDS ECCCCCEECCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH EVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD HHHHHHCCCCCEEECCCCEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIAR EEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC DAGLYDLFKEVQVPAPRATFADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASA CCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECHHCCCCCCC APADGGYAFRWSTTQDGAAAGATRFRFVLSRSKDLSNPIVDQVDAQGGRIAVSNLTPGDY CCCCCCEEEEECCCCCCCCCCHHHEEEEECCCCCCCCCHHHHHCCCCCEEEEECCCCCHH YWSVIAERYEGGRFHEKASAVNAFTIAR HHHHHHHHHCCCCHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA