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The map label for this gene is ihfA

Identifier: 53719552

GI number: 53719552

Start: 2309224

End: 2309571

Strand: Reverse

Name: ihfA

Synonym: BPSL1939

Alternate gene names: 53719552

Gene position: 2309571-2309224 (Counterclockwise)

Preceding gene: 53719553

Following gene: 53719551

Centisome position: 56.68

GC content: 66.38

Gene sequence:

>348_bases
ATGGCCCGCGACGTCCCGGCGTCCACGCCCGCCGGCGATACGCCGACGCTGACGAAGGCCGAGCTGGCCGAACTGCTGTT
CGACAGCGTCGGCCTCAACAAGCGCGAGGCGAAGGACATGGTCGAGGCGTTTTTCGAGGTGATCCGCGATGCGCTCGAAA
ACGGCGAGAGCGTGAAGCTGTCGGGCTTCGGCAATTTCCAGCTGCGCGACAAGCCGCAGCGGCCGGGGCGCAATCCGAAG
ACGGGCGAGGCGATTCCGATCGCCGCGCGCCGTGTCGTGACGTTCCATGCGAGCCAGAAATTGAAGGCGCTCGTCGAAAA
CGGCGCCGAGCCGGATCTCGCGCGTTAA

Upstream 100 bases:

>100_bases
TGCCGGTGTTTTTGTCCAAGTTTGACGCGCTGGTTTTGCAGATATGAACGACATGAACTCGAGTGAATTTGAAGCCCTTC
TGACGGCGCAGCGCAGCGCC

Downstream 100 bases:

>100_bases
GCCGGCGTTTCGCCTCCTGCGCGCGGCGCCCGCGCCTCTTACCGACGGTTAACTGACGATGACGTCGACGGTTGAGAAAG
TCGTGTTGCCCCCGATTCCC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MARDVPASTPAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPK
TGEAIPIAARRVVTFHASQKLKALVENGAEPDLAR

Sequences:

>Translated_115_residues
MARDVPASTPAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPK
TGEAIPIAARRVVTFHASQKLKALVENGAEPDLAR
>Mature_114_residues
ARDVPASTPAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKT
GEAIPIAARRVVTFHASQKLKALVENGAEPDLAR

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=96, Percent_Identity=72.9166666666667, Blast_Score=141, Evalue=9e-36,
Organism=Escherichia coli, GI1790433, Length=86, Percent_Identity=36.046511627907, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1786644, Length=86, Percent_Identity=33.7209302325581, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_BURPS (Q63TM8)

Other databases:

- EMBL:   BX571965
- RefSeq:   YP_108538.1
- HSSP:   P0A6X7
- ProteinModelPortal:   Q63TM8
- SMR:   Q63TM8
- GeneID:   3092200
- GenomeReviews:   BX571965_GR
- KEGG:   bps:BPSL1939
- NMPDR:   fig|272560.3.peg.3701
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- ProtClustDB:   PRK00285
- BioCyc:   BPSE272560:BPSL1939-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 12502; Mature: 12371

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARDVPASTPAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
SGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLAR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ARDVPASTPAGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
SGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLAR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA