| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is tap [H]
Identifier: 53719488
GI number: 53719488
Start: 2230595
End: 2232307
Strand: Reverse
Name: tap [H]
Synonym: BPSL1875
Alternate gene names: 53719488
Gene position: 2232307-2230595 (Counterclockwise)
Preceding gene: 53719491
Following gene: 53719487
Centisome position: 54.79
GC content: 65.91
Gene sequence:
>1713_bases GTGGGCTTTTTGAACACCTTTTCGTTGCGCAGATACGCCTCCCTGCTGCTGGGCCTGCTCGCCGTAGCGGCCGTTGCGAT AGGCCTATGCCAGTGGCGGCTCGATGCCGCGAATCACCGCGTCGCGCAGGCCTACCAGCAGCGCTATGTGTCGACCCAGC TCGCGAACGAACTGCGCCGCAGCTCCGACGATTTGACCCGGCTTGCGCGCACCTATGTCGCGACGGGCGACGCGAAATGG GAGCAGCAATACAACGAGATACTCGCGATTCGCTCGGGCAAGGCGCCGCGCCCGCTCGATTACGATCGTATTTACTGGGA CTTTCGCGCGGCCGACGAACCGCTGCGCGCGGAGCAGGGCGAGACGATCTCGCTGCAGGAGATGATGAAGCGCGCCGGCT TCACCGACGAGGAGTTCGCGAAGCTGCACGACGCCGAGCAGAACTCGAATGATCTCGTGAAGACCGAGACGGTCGCGATG AATCTCGTCAAAGGGCTGACGCCCGACGACGCAGGCCATTTCACGAAGCAAGGCTCGCCCGATCTCGAGAAGGCGCGGGC CCTGATGTTCGACGCGAACTACCACCGGTTCAAGGCGAAGATCATGCATCCCATCGACGATTTCCTGAAGCTGCTCGACG CGCGCACCGAAGGCGCGATCGCCCGCGCGCAGGCAAGCGCGCAAACGTGGAAGATCATTTCGGCCGCAGTGGCGATCGGC ATCCTCGCTTTCTTCGCGCTGATGCTGCACATGATGTTCAAGCGCGTGCTCGCCGGGCTCGAGGCGGCCGCCTCGACCGC GAGCCGCGTCGCCGCGGGCGATCTGACCTCTCATTTCGACGCGCACCGCGTCGACCCGCAGGCGAAGGACGAGATTTCCC GCGTGATGCGCGCGCTGCAGACGATGAACGACGGGCTCGTGCGCATCGTGACCGACGTGCGCTCGGGCACCGATACGATC GCGACGGCGTCCCACGAAATCATGGCCGGCAACAACGATCTGTCCGCGCGAACCGAGCAGCAGGCCGCGTCGCTGCAGGA AACGGCCGCGAGCATGAGCGAGCTCACCGCCACCGTGAAGCTGAACCTCGAGAACGCGCGGCAGGCGAACATGATCGGCT CCAACGCGGTGTCGACGGTCGAGAAGGGCTCGGTCTCGGTCGAGCAACTCGTCACCACGGTCAACGCGATCAGCACGAAC TCGGGCAAGATCGCCGACATCATCTCGCTGATCGAGGGCATTGCGTTCCAGACGAACATCCTTGCGCTGAACGCCGCCGT CGAGGCGGCGCGCGCGGGCGAGCAGGGCCGTGGCTTCGCCGTCGTCGCGAGCGAAGTGCGCAGTCTCGCCCAGCGCTCGT CGTCGGCGGCCAAGGAGATCAAGGATCTCATCGAGACGTCGATCGATACGGTTCGGGACGGCGTGTCGAAGGCCGACGAG GTCGGGCAGCACATCGTGGAGGTGAAGCAGGCGATCCGGCGCGTCGCCGATCTCGTCGGCGAGATCACCGCGGCGTCGGA AGAGCAAACCCGCGGCATCGAGCAGGTCGATGCCGCCGTCAGCCAGATGGACCGCGTGACGCAGCAAAACGCGGCCCTCG TCGAGCAGGCCGCGGCCGCGTCGAAGGCGATGGACGATCAGGCCGGCAACCTGCGCGCGGCGGCGTCGATCTTCAAGCTG CCCGGGCGCGCGAGCCTGTTCGCGCACGCGTAG
Upstream 100 bases:
>100_bases TTGCTACGGAATTGCCGCATTAGGAGTGCCACTTATTCAGCGTGCTTCCTCGCGGCCGATATACAGCGGACGACGCGTCG CACTCAAACCGGAGAACACC
Downstream 100 bases:
>100_bases ACCGGCTTTCGCCGACGGGATCGGCAACGCGAGGGCGGGGCATGCGCGTGTGCCGCCGGCTGCCGGCGTGGCCGGATCAA GGCAATCAACCGACGCGAGG
Product: putative methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: MCP-IV; Dipeptide chemoreceptor protein [H]
Number of amino acids: Translated: 570; Mature: 569
Protein sequence:
>570_residues MGFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAANHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKW EQQYNEILAIRSGKAPRPLDYDRIYWDFRAADEPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTETVAM NLVKGLTPDDAGHFTKQGSPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDARTEGAIARAQASAQTWKIISAAVAIG ILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLTSHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTI ATASHEIMAGNNDLSARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNAISTN SGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKEIKDLIETSIDTVRDGVSKADE VGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQVDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFKL PGRASLFAHA
Sequences:
>Translated_570_residues MGFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAANHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKW EQQYNEILAIRSGKAPRPLDYDRIYWDFRAADEPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTETVAM NLVKGLTPDDAGHFTKQGSPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDARTEGAIARAQASAQTWKIISAAVAIG ILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLTSHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTI ATASHEIMAGNNDLSARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNAISTN SGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKEIKDLIETSIDTVRDGVSKADE VGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQVDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFKL PGRASLFAHA >Mature_569_residues GFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAANHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWE QQYNEILAIRSGKAPRPLDYDRIYWDFRAADEPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTETVAMN LVKGLTPDDAGHFTKQGSPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDARTEGAIARAQASAQTWKIISAAVAIGI LAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLTSHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTIA TASHEIMAGNNDLSARTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNAISTNS GKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKEIKDLIETSIDTVRDGVSKADEV GQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQVDAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFKLP GRASLFAHA
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788194, Length=371, Percent_Identity=46.3611859838275, Blast_Score=290, Evalue=2e-79, Organism=Escherichia coli, GI2367378, Length=338, Percent_Identity=50.5917159763314, Blast_Score=269, Evalue=3e-73, Organism=Escherichia coli, GI1787690, Length=390, Percent_Identity=44.3589743589744, Blast_Score=263, Evalue=2e-71, Organism=Escherichia coli, GI1788195, Length=291, Percent_Identity=53.2646048109966, Blast_Score=259, Evalue=3e-70, Organism=Escherichia coli, GI1789453, Length=334, Percent_Identity=33.2335329341317, Blast_Score=176, Evalue=4e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR003122 - InterPro: IPR004091 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 61687; Mature: 61556
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAANHRVAQAYQQRYVSTQLANELRR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSDDLTRLARTYVATGDAKWEQQYNEILAIRSGKAPRPLDYDRIYWDFRAADEPLRAEQG CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEHHCCCCCCCCCCC ETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTETVAMNLVKGLTPDDAGHFTKQGSP CEECHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC DLEKARALMFDANYHRFKAKIMHPIDDFLKLLDARTEGAIARAQASAQTWKIISAAVAIG CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH ILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLTSHFDAHRVDPQAKDEISRVMRALQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHH TMNDGLVRIVTDVRSGTDTIATASHEIMAGNNDLSARTEQQAASLQETAASMSELTATVK HHCCCHHHHHHHHCCCCCHHHHCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEE LNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNAISTNSGKIADIISLIEGIAFQTNI EECCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKEIKDLIETSIDTVRDGVSKADE HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQVDAAVSQMDRVTQQNAALVEQAAAA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKAMDDQAGNLRAAASIFKLPGRASLFAHA HHHHCCCCCCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure GFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAANHRVAQAYQQRYVSTQLANELRR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSDDLTRLARTYVATGDAKWEQQYNEILAIRSGKAPRPLDYDRIYWDFRAADEPLRAEQG CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEHHCCCCCCCCCCC ETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTETVAMNLVKGLTPDDAGHFTKQGSP CEECHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC DLEKARALMFDANYHRFKAKIMHPIDDFLKLLDARTEGAIARAQASAQTWKIISAAVAIG CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH ILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLTSHFDAHRVDPQAKDEISRVMRALQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHH TMNDGLVRIVTDVRSGTDTIATASHEIMAGNNDLSARTEQQAASLQETAASMSELTATVK HHCCCHHHHHHHHCCCCCHHHHCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEE LNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNAISTNSGKIADIISLIEGIAFQTNI EECCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKEIKDLIETSIDTVRDGVSKADE HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQVDAAVSQMDRVTQQNAALVEQAAAA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKAMDDQAGNLRAAASIFKLPGRASLFAHA HHHHCCCCCCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6305515; 9097040; 9278503 [H]