| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53719433
Identifier: 53719433
GI number: 53719433
Start: 2168060
End: 2168578
Strand: Reverse
Name: 53719433
Synonym: BPSL1820
Alternate gene names: NA
Gene position: 2168578-2168060 (Counterclockwise)
Preceding gene: 53719434
Following gene: 53719432
Centisome position: 53.22
GC content: 77.26
Gene sequence:
>519_bases GTGGCGCGCCGGCCGGACTTCCCGATTTCACGCACGCCCATGATTCTCCCGCTCAAGCTCGTCGCCAGTTGGACGCTCGC GTCGCTCGCGCTCGCCGATCTGCGCACGCGGCGGCTCGCGACCTTCGCGGTCGCGCTCGTCGGCGCGCTGTACGCCGCGC TGGCGCTCGCGGGCGCGCCGGGCGACGGCGGCTTCGCGTCGCATGCGGCGCTCGGCGCGGCCGCGTTCGCGCTCGGCGCG GCGATGTTCCGCGCCGGCTGGATCGCCGGCGGCGATGTCAAGCTCGCGGCCGTGGTGTTTCTATGGGCAGGCCCCGCGCA CGCGTGGCCCGTCGCGTTCGCGATCGGCGTCGGCGGCTTGGCCGTCGGCGCCGTCTGCATCGCGGCCGGGCGTGCGCCGC GCGTGCTCGCGTGGTTCGCGCCGGCGCGCGGCGTGCCGTACGGGGTCGCGCTCGCGGCGGGCGGCCTGCTCGCCGTATGG GCGCCGGCGGCTTGCCGGCTGCCCGGATGTCTCGGATGA
Upstream 100 bases:
>100_bases GGCGGCTCCGGCTTGCCGGAATTGTTCCAGAACATGATCACCAAGGTGACGAGCGTACAGACCAACGGCCATTGACGATG AACGGCCGGTGGCGCCTGCC
Downstream 100 bases:
>100_bases CGGGCGGCTGATATGTCCCATTTTCTCAAGCTCGCCGGCCTGATGCTCGTCGCGGTGGTCGGCGCGTTTCTGTTCCGTGT GCTGTACGTCGCGGCGTCGC
Product: putative fimbriae assembly-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MARRPDFPISRTPMILPLKLVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALGA AMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAWFAPARGVPYGVALAAGGLLAVW APAACRLPGCLG
Sequences:
>Translated_172_residues MARRPDFPISRTPMILPLKLVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALGA AMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAWFAPARGVPYGVALAAGGLLAVW APAACRLPGCLG >Mature_171_residues ARRPDFPISRTPMILPLKLVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALGAA MFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAWFAPARGVPYGVALAAGGLLAVWA PAACRLPGCLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17121; Mature: 16990
Theoretical pI: Translated: 11.63; Mature: 11.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRPDFPISRTPMILPLKLVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAP CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GDGGFASHAALGAAAFALGAAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHEEECCCCCCHHHHHHHHHHHHH AVGAVCIAAGRAPRVLAWFAPARGVPYGVALAAGGLLAVWAPAACRLPGCLG HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCHHEECCCHHHCCCCCCC >Mature Secondary Structure ARRPDFPISRTPMILPLKLVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAP CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GDGGFASHAALGAAAFALGAAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHEEECCCCCCHHHHHHHHHHHHH AVGAVCIAAGRAPRVLAWFAPARGVPYGVALAAGGLLAVWAPAACRLPGCLG HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCHHEECCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA