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The map label for this gene is yfcS [H]

Identifier: 53719412

GI number: 53719412

Start: 2140378

End: 2141127

Strand: Reverse

Name: yfcS [H]

Synonym: BPSL1799

Alternate gene names: 53719412

Gene position: 2141127-2140378 (Counterclockwise)

Preceding gene: 53719413

Following gene: 53719411

Centisome position: 52.55

GC content: 70.53

Gene sequence:

>750_bases
ATGACCGACATGACCCATCGATTCCCGTGCGCGGCGCGCGCACGGCGCGCGGCCGCCGCGCTCTTCATCGCGCTGGCGGG
CGCCGCGCACGCGGCGATCGTGCCCGACCGCACGCGCGTGATCCTCAACGAAGGCGAGCAGGCCGCGATCGTGACGCTCT
CGAACAAGAGCGATGCGTATCCGTATCTCGTGCAGTCGTGGCTCGAGGACGAGCGCGGCAACCGGATCACGACGCCGCTG
ATGGTCGTGCCGCCGCTGCAGCGCGTCGAGCCGAAGGAGCGCAACGTGCTTCGCATCGCGCGGATGCCGGGCGCGACGCT
GCCCGCCGACCGCGAATCGGTGTTCTATCTGAACATCCGCGAGGTGCCGCCGAAGACGGACACGCCGAACGCGCTGCAAA
TCGCGCTGCACACGCAGATGAAGCTGTTCTACCGGCCGGCGGGCGTGCAGCCCGCGCGCGACGAGGACCCGACGCTGCCG
ATGACGCTGCGCGTCGATGCGGCCGCGCGCAAGCTCGTGTTCGACAACCCGACGCCGTACCACGTGACGGTCGTCGCGCT
CGCAGCGGGCGCGAACCGGGCGGCGCTGCCGCTCGATCCGGTGATGGTGAATCCGAAGAGCGCGGCGAGCGTGCCGTTCT
CGGCGTCGGCGGCGGGCGGCCTGTTCGTCACGCACGTCGACGACTACGGCGGCCAGGTGACGGTCGAATACACGTGCGAC
GGCCTCGCGTGCCGCAGCGTGAAGCGATGA

Upstream 100 bases:

>100_bases
CCGCCCCTCGAATTCAAACCCGACCTAACCGACCTAACCGACCTAACCGACCTAACCGACCTAACCACCGAACCACCGAA
CCACCGACCGACCCGATCCG

Downstream 100 bases:

>100_bases
GCGCGCTCGCCCGTCTTTTGCCGCGGCGCGCGCCGGGCTGGCTCGCATGGGCGTGCGCGGCGCTTGTCGTCGCGCTCGCG
CAGCCCGCGTGGGCGGTGCG

Product: putative fimbrial chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTDMTHRFPCAARARRAAAALFIALAGAAHAAIVPDRTRVILNEGEQAAIVTLSNKSDAYPYLVQSWLEDERGNRITTPL
MVVPPLQRVEPKERNVLRIARMPGATLPADRESVFYLNIREVPPKTDTPNALQIALHTQMKLFYRPAGVQPARDEDPTLP
MTLRVDAAARKLVFDNPTPYHVTVVALAAGANRAALPLDPVMVNPKSAASVPFSASAAGGLFVTHVDDYGGQVTVEYTCD
GLACRSVKR

Sequences:

>Translated_249_residues
MTDMTHRFPCAARARRAAAALFIALAGAAHAAIVPDRTRVILNEGEQAAIVTLSNKSDAYPYLVQSWLEDERGNRITTPL
MVVPPLQRVEPKERNVLRIARMPGATLPADRESVFYLNIREVPPKTDTPNALQIALHTQMKLFYRPAGVQPARDEDPTLP
MTLRVDAAARKLVFDNPTPYHVTVVALAAGANRAALPLDPVMVNPKSAASVPFSASAAGGLFVTHVDDYGGQVTVEYTCD
GLACRSVKR
>Mature_248_residues
TDMTHRFPCAARARRAAAALFIALAGAAHAAIVPDRTRVILNEGEQAAIVTLSNKSDAYPYLVQSWLEDERGNRITTPLM
VVPPLQRVEPKERNVLRIARMPGATLPADRESVFYLNIREVPPKTDTPNALQIALHTQMKLFYRPAGVQPARDEDPTLPM
TLRVDAAARKLVFDNPTPYHVTVVALAAGANRAALPLDPVMVNPKSAASVPFSASAAGGLFVTHVDDYGGQVTVEYTCDG
LACRSVKR

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=215, Percent_Identity=39.0697674418605, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=35.6828193832599, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1786936, Length=230, Percent_Identity=33.0434782608696, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1790771, Length=219, Percent_Identity=32.8767123287671, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786333, Length=225, Percent_Identity=32, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786743, Length=216, Percent_Identity=31.9444444444444, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788428, Length=229, Percent_Identity=28.3842794759825, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789532, Length=217, Percent_Identity=32.258064516129, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787171, Length=211, Percent_Identity=32.7014218009479, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI87081806, Length=229, Percent_Identity=28.3842794759825, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27035; Mature: 26904

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDMTHRFPCAARARRAAAALFIALAGAAHAAIVPDRTRVILNEGEQAAIVTLSNKSDAY
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCEEEEEEECCCCCCC
PYLVQSWLEDERGNRITTPLMVVPPLQRVEPKERNVLRIARMPGATLPADRESVFYLNIR
HHHHHHHHHHCCCCEECCCEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEE
EVPPKTDTPNALQIALHTQMKLFYRPAGVQPARDEDPTLPMTLRVDAAARKLVFDNPTPY
ECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHCEEEECCCCCE
HVTVVALAAGANRAALPLDPVMVNPKSAASVPFSASAAGGLFVTHVDDYGGQVTVEYTCD
EEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECC
GLACRSVKR
CEECCCCCC
>Mature Secondary Structure 
TDMTHRFPCAARARRAAAALFIALAGAAHAAIVPDRTRVILNEGEQAAIVTLSNKSDAY
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCEEEEEEECCCCCCC
PYLVQSWLEDERGNRITTPLMVVPPLQRVEPKERNVLRIARMPGATLPADRESVFYLNIR
HHHHHHHHHHCCCCEECCCEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEE
EVPPKTDTPNALQIALHTQMKLFYRPAGVQPARDEDPTLPMTLRVDAAARKLVFDNPTPY
ECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHCEEEECCCCCE
HVTVVALAAGANRAALPLDPVMVNPKSAASVPFSASAAGGLFVTHVDDYGGQVTVEYTCD
EEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECC
GLACRSVKR
CEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]