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The map label for this gene is ydcR [H]

Identifier: 53718959

GI number: 53718959

Start: 1542534

End: 1544009

Strand: Reverse

Name: ydcR [H]

Synonym: BPSL1321

Alternate gene names: 53718959

Gene position: 1544009-1542534 (Counterclockwise)

Preceding gene: 53718960

Following gene: 53718957

Centisome position: 37.89

GC content: 69.85

Gene sequence:

>1476_bases
ATGAAACGTTACGAAACGCTCGCCCGCGCGATGGCCGACGACATCCGGTCCGGCAACATCACGACCGGCACGCGCATGCC
GTCGCTGCGCCAGATGATCGCCCAGCATCGCGTCAGCCAATCGACCGTGTTTCGTGCTTACTATCTGCTCGAGCAGTGGG
GCTTGATTCGCGCGCGCGAACGCTCGGGCTACTACGTCGCGCACGGCGCGCAGGCGAGCGTCCGCGCGAACGGCATGAAC
GGCATGAATGGTGCGCACGCGACGCAAGACGGCCGTCTCACGCGCGATGCCGCGCCCGCCGAATCGCGCAAGGTCGATAT
CAGCGATCTCGTGTTCTCCGTGCTCGAGGCCGCGACGCATCCGCGCATCGTGCCGCTCGGCTCCGCGTTCGCCTCGCCGC
ATCTGTTTCCGCTGCCGCGCCTCGCGAAGTCGCTCGCGCAGGCCGCGCGGCTCGTGAGCCCGTGGAGCGCCGTCGTCGAT
CTGCCGCCCGGCAGCGAGCAGTTGCGCCGCCAGATCGCGTTGCGCTACCTCGGCATCGGCGTGTCGCAGCCGATCGACGA
GATCGTCGTGACCAACGGCGCGCTCGAGGCGCTCAACCTGTGCCTGACGGCCGTCACGCGCCCCGGCGACGTGGTCGCCG
TCGAAGCGCCCGGCTTCTATGCGGCGCTGCAGGCAATCGAGCGGCTCGATCTGCGCGCGGTCGAGATTCCCGTCGATCCG
CGCACGGGCCTCGACCTCGACGCGCTCGCCGCCGCGCTCGAACGCCACGACGTGCGCGCGTGCTGGTTCATGACGAACTT
CCAGAATCCGACGGGCGTCACGCTGTCGGCCGACAAGAAGAAGGCGCTCGTCGACATGCTCGCCGCGCGCGAGGTGCCGC
TCATCGAGGACGACGTCTACGGCGAGCTGCATCACGGGCCGGACTACCCGCTGCCCGCGCGCGCGTTCGACAAGCACGGG
CTCGTCATGCACTGCAGCTCGTTCTCGAAGACGCTCGCGCCCGGCTACCGGATCGGCTGGGCGGCGGCCGGGCGCTTCGC
CGAGAAGGTGCAGCGGCTCAAGCTGATGACGACGCTGTCCGCGAGCATTCCCGCGCAGGTCGGCATCGCCGACTATCTCG
AGCACGGCGGCTACGATCGGCACCTGCGCAAGCTGCGCGGCGCGCTGCGCGGGCAGATGGAGCGGATGAACGACGCGTTG
ATGCGCCATCTGCCGCCCGACGTGCACTGGACGCTGCCGGACGGCGGCTACTTCGTGTGGCTGGAATTTCCCGACGCGAT
CGACGCGATGGGGCTGCATCGCGAAGCGATCCGGCGCGGCGTGAGCGTCGCGCCCGGGCCGCTCTTCTCCGCCGCGCATG
CGTTCGAGCGCTGCGTGCGGATCAACTTCGGCCACCCGTGGAGCGCCGCCGTCGACGACGCGATCCGCACCGTCGGCGAG
CTCGTCACGCAGCCGTCGGTGCGCAAGCGGCGCTGA

Upstream 100 bases:

>100_bases
GGCGTCGCCTCCCGATCGCGCCGCGCCTTTCCTTTTACTGCACCGCATAAGACAATATGCGCCCCGTGCCGGCGCACCCT
TCCCCAACCTGCCCTTGTCG

Downstream 100 bases:

>100_bases
CGCGCGACGCGGCGCGAGCGACACGAGCGGCCCGCCGCGCGCGCGGCCGACGGCCGTGCCGGGCGACGCGCACCGCTCAG
TGAATCACGGTAATCGCGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKRYETLARAMADDIRSGNITTGTRMPSLRQMIAQHRVSQSTVFRAYYLLEQWGLIRARERSGYYVAHGAQASVRANGMN
GMNGAHATQDGRLTRDAAPAESRKVDISDLVFSVLEAATHPRIVPLGSAFASPHLFPLPRLAKSLAQAARLVSPWSAVVD
LPPGSEQLRRQIALRYLGIGVSQPIDEIVVTNGALEALNLCLTAVTRPGDVVAVEAPGFYAALQAIERLDLRAVEIPVDP
RTGLDLDALAAALERHDVRACWFMTNFQNPTGVTLSADKKKALVDMLAAREVPLIEDDVYGELHHGPDYPLPARAFDKHG
LVMHCSSFSKTLAPGYRIGWAAAGRFAEKVQRLKLMTTLSASIPAQVGIADYLEHGGYDRHLRKLRGALRGQMERMNDAL
MRHLPPDVHWTLPDGGYFVWLEFPDAIDAMGLHREAIRRGVSVAPGPLFSAAHAFERCVRINFGHPWSAAVDDAIRTVGE
LVTQPSVRKRR

Sequences:

>Translated_491_residues
MKRYETLARAMADDIRSGNITTGTRMPSLRQMIAQHRVSQSTVFRAYYLLEQWGLIRARERSGYYVAHGAQASVRANGMN
GMNGAHATQDGRLTRDAAPAESRKVDISDLVFSVLEAATHPRIVPLGSAFASPHLFPLPRLAKSLAQAARLVSPWSAVVD
LPPGSEQLRRQIALRYLGIGVSQPIDEIVVTNGALEALNLCLTAVTRPGDVVAVEAPGFYAALQAIERLDLRAVEIPVDP
RTGLDLDALAAALERHDVRACWFMTNFQNPTGVTLSADKKKALVDMLAAREVPLIEDDVYGELHHGPDYPLPARAFDKHG
LVMHCSSFSKTLAPGYRIGWAAAGRFAEKVQRLKLMTTLSASIPAQVGIADYLEHGGYDRHLRKLRGALRGQMERMNDAL
MRHLPPDVHWTLPDGGYFVWLEFPDAIDAMGLHREAIRRGVSVAPGPLFSAAHAFERCVRINFGHPWSAAVDDAIRTVGE
LVTQPSVRKRR
>Mature_491_residues
MKRYETLARAMADDIRSGNITTGTRMPSLRQMIAQHRVSQSTVFRAYYLLEQWGLIRARERSGYYVAHGAQASVRANGMN
GMNGAHATQDGRLTRDAAPAESRKVDISDLVFSVLEAATHPRIVPLGSAFASPHLFPLPRLAKSLAQAARLVSPWSAVVD
LPPGSEQLRRQIALRYLGIGVSQPIDEIVVTNGALEALNLCLTAVTRPGDVVAVEAPGFYAALQAIERLDLRAVEIPVDP
RTGLDLDALAAALERHDVRACWFMTNFQNPTGVTLSADKKKALVDMLAAREVPLIEDDVYGELHHGPDYPLPARAFDKHG
LVMHCSSFSKTLAPGYRIGWAAAGRFAEKVQRLKLMTTLSASIPAQVGIADYLEHGGYDRHLRKLRGALRGQMERMNDAL
MRHLPPDVHWTLPDGGYFVWLEFPDAIDAMGLHREAIRRGVSVAPGPLFSAAHAFERCVRINFGHPWSAAVDDAIRTVGE
LVTQPSVRKRR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=395, Percent_Identity=23.7974683544304, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI33469970, Length=395, Percent_Identity=23.7974683544304, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI4507369, Length=175, Percent_Identity=24.5714285714286, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787710, Length=484, Percent_Identity=46.6942148760331, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI1790797, Length=492, Percent_Identity=34.1463414634146, Blast_Score=276, Evalue=3e-75,
Organism=Saccharomyces cerevisiae, GI6321000, Length=281, Percent_Identity=22.7758007117438, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54001; Mature: 54001

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYETLARAMADDIRSGNITTGTRMPSLRQMIAQHRVSQSTVFRAYYLLEQWGLIRARE
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
RSGYYVAHGAQASVRANGMNGMNGAHATQDGRLTRDAAPAESRKVDISDLVFSVLEAATH
CCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
PRIVPLGSAFASPHLFPLPRLAKSLAQAARLVSPWSAVVDLPPGSEQLRRQIALRYLGIG
CCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHHHHCCC
VSQPIDEIVVTNGALEALNLCLTAVTRPGDVVAVEAPGFYAALQAIERLDLRAVEIPVDP
CCCCHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCC
RTGLDLDALAAALERHDVRACWFMTNFQNPTGVTLSADKKKALVDMLAAREVPLIEDDVY
CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCC
GELHHGPDYPLPARAFDKHGLVMHCSSFSKTLAPGYRIGWAAAGRFAEKVQRLKLMTTLS
CCCCCCCCCCCCCHHHCCCCEEEEECHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
ASIPAQVGIADYLEHGGYDRHLRKLRGALRGQMERMNDALMRHLPPDVHWTLPDGGYFVW
HCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEE
LEFPDAIDAMGLHREAIRRGVSVAPGPLFSAAHAFERCVRINFGHPWSAAVDDAIRTVGE
EECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LVTQPSVRKRR
HHCCCCHHCCC
>Mature Secondary Structure
MKRYETLARAMADDIRSGNITTGTRMPSLRQMIAQHRVSQSTVFRAYYLLEQWGLIRARE
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
RSGYYVAHGAQASVRANGMNGMNGAHATQDGRLTRDAAPAESRKVDISDLVFSVLEAATH
CCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
PRIVPLGSAFASPHLFPLPRLAKSLAQAARLVSPWSAVVDLPPGSEQLRRQIALRYLGIG
CCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHHHHCCC
VSQPIDEIVVTNGALEALNLCLTAVTRPGDVVAVEAPGFYAALQAIERLDLRAVEIPVDP
CCCCHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCC
RTGLDLDALAAALERHDVRACWFMTNFQNPTGVTLSADKKKALVDMLAAREVPLIEDDVY
CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCC
GELHHGPDYPLPARAFDKHGLVMHCSSFSKTLAPGYRIGWAAAGRFAEKVQRLKLMTTLS
CCCCCCCCCCCCCHHHCCCCEEEEECHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
ASIPAQVGIADYLEHGGYDRHLRKLRGALRGQMERMNDALMRHLPPDVHWTLPDGGYFVW
HCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEE
LEFPDAIDAMGLHREAIRRGVSVAPGPLFSAAHAFERCVRINFGHPWSAAVDDAIRTVGE
EECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
LVTQPSVRKRR
HHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]