| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53718870
Identifier: 53718870
GI number: 53718870
Start: 1419460
End: 1420566
Strand: Reverse
Name: 53718870
Synonym: BPSL1235
Alternate gene names: NA
Gene position: 1420566-1419460 (Counterclockwise)
Preceding gene: 53718871
Following gene: 53718869
Centisome position: 34.86
GC content: 68.83
Gene sequence:
>1107_bases ATGGCAACCGAGCACGATCCGCAGTCGAGTCAAGCCGATTACGCCGCATTCGAGGGCACGCGCGCTGTCGGCGACGCGCA GCGCTTCGACGTGGATGCGCTCGCCGCGTGGCTCGCGAAGCACGTCGGCGGTTTCGCCGGCCCGCTTGCCGTCGAGCAGT TCAAGGGCGGCCAGTCGAATCCGACGTTCAAGCTCGTCACGCCCGCACGCAGCTATGTGCTGCGCGCGAAGCCCGCGCCG GCGGCGAAGCTGCTGCCGTCCGCGCACGCGATCGAGCGCGAGTATCGCGTGATGGCCGCGCTCGCCGGCACCGGCGTGCC CGTCGCGCCGATGCTCGCGCGCTGCGACGACGAAAGCGTGATCGGCCGCGCGTTCTACGTGATGGCGTTCGTCGACGGCC GCGTGCTATGGGATCCGTCGCTGCCCGGCATGACGCCCGCCGAGCGCGGCCGCCACTACGACGAAATGAACCGCGTGATC GCCGCGCTGCATTCGATCGATCCGCAGGCGGTCGGGCTCGCCGATTACGGCAAGCCGGGCAACTATCTCGCGCGCCAGAT CGCGCGCTGGAGCAAGCAGTATCTCGCGTCGGAAACCGAGCCGATCGATGCGATGCGCAGGCTGATCGATTGGCTGCCGC AGCATCTGCGCCCCGAATCCGGGCGCGACGCGCGCGTGTCGATCGTGCACGGCGACTATCGGCTCGACAACCTGATCTTC GACGCGCACGCGCCGCGCGTGCTCGCGGTGCTCGACTGGGAACTGTCGACGCTCGGCGATCCGCTCGCGGATTTCGCGTA TCACTGCATGGCTTGGCACGTCGCGCCCGAGCGCTTTCGCGGCATTGCGGGGCTCGACCTGCGCTCGCTCGGGATTCCCG ACGAAGCGCAATACGTCGCGCGCTACTGCGAACGAACGGGCCTCACGATGCCGGAGAACTGGAACTTCTATCTCGCGTAC AACATGTTCCGGATCGCCGCGATCCTGCAAGGCATCATGAAGCGCGTCGCCGACGGCACCGCATCGAGCGCGCAGGCGCT CGATGCCGGCCGGCGCGCGCGGCCGATGGCCGAGCTCGCGTGGCGCTATGCGCAGCATGCGCGCTAG
Upstream 100 bases:
>100_bases GCTGCACCGCGACGTGCGCAACACGACGATGGAAGTGCTGTATCACCAGTTCTTGCAAAGCACGCGCGAGTAGGCGCGTC GCGCGGACCCGGAGGGAACG
Downstream 100 bases:
>100_bases CCGCGCGCGCCCCTCACCGAACCGATCGACCAGCGAGGCAGCCATGCATTTCGACTACTCCGCGAAAGTGGAAGCGTTGC GAGCGCGGCTCGGCGCGTTC
Product: putative phosphotransferase
Products: NA
Alternate protein names: Phosphotransferase; Phosphotransferase Family Protein; Phosphotransferase Family Protein; Acyl-CoA Dehydrogenase; Phosphotransferase Family; Acyl-Co A Dehydrogenase; Acyl-CoA Dehydrogenase Domain-Containing Protein; Acyl-CoA Dehydrogenase FadE; Tyrosine Protein Kinase/Aminoglycoside Phosphotransferase; Acyl-Coa Dehydrogenase Fade; Acyl-CoA Dehydrogenase Family Member
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MATEHDPQSSQADYAAFEGTRAVGDAQRFDVDALAAWLAKHVGGFAGPLAVEQFKGGQSNPTFKLVTPARSYVLRAKPAP AAKLLPSAHAIEREYRVMAALAGTGVPVAPMLARCDDESVIGRAFYVMAFVDGRVLWDPSLPGMTPAERGRHYDEMNRVI AALHSIDPQAVGLADYGKPGNYLARQIARWSKQYLASETEPIDAMRRLIDWLPQHLRPESGRDARVSIVHGDYRLDNLIF DAHAPRVLAVLDWELSTLGDPLADFAYHCMAWHVAPERFRGIAGLDLRSLGIPDEAQYVARYCERTGLTMPENWNFYLAY NMFRIAAILQGIMKRVADGTASSAQALDAGRRARPMAELAWRYAQHAR
Sequences:
>Translated_368_residues MATEHDPQSSQADYAAFEGTRAVGDAQRFDVDALAAWLAKHVGGFAGPLAVEQFKGGQSNPTFKLVTPARSYVLRAKPAP AAKLLPSAHAIEREYRVMAALAGTGVPVAPMLARCDDESVIGRAFYVMAFVDGRVLWDPSLPGMTPAERGRHYDEMNRVI AALHSIDPQAVGLADYGKPGNYLARQIARWSKQYLASETEPIDAMRRLIDWLPQHLRPESGRDARVSIVHGDYRLDNLIF DAHAPRVLAVLDWELSTLGDPLADFAYHCMAWHVAPERFRGIAGLDLRSLGIPDEAQYVARYCERTGLTMPENWNFYLAY NMFRIAAILQGIMKRVADGTASSAQALDAGRRARPMAELAWRYAQHAR >Mature_367_residues ATEHDPQSSQADYAAFEGTRAVGDAQRFDVDALAAWLAKHVGGFAGPLAVEQFKGGQSNPTFKLVTPARSYVLRAKPAPA AKLLPSAHAIEREYRVMAALAGTGVPVAPMLARCDDESVIGRAFYVMAFVDGRVLWDPSLPGMTPAERGRHYDEMNRVIA ALHSIDPQAVGLADYGKPGNYLARQIARWSKQYLASETEPIDAMRRLIDWLPQHLRPESGRDARVSIVHGDYRLDNLIFD AHAPRVLAVLDWELSTLGDPLADFAYHCMAWHVAPERFRGIAGLDLRSLGIPDEAQYVARYCERTGLTMPENWNFYLAYN MFRIAAILQGIMKRVADGTASSAQALDAGRRARPMAELAWRYAQHAR
Specific function: Unknown
COG id: COG3173
COG function: function code R; Predicted aminoglycoside phosphotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48976061, Length=373, Percent_Identity=49.8659517426273, Blast_Score=347, Evalue=1e-95, Organism=Homo sapiens, GI211971008, Length=373, Percent_Identity=49.8659517426273, Blast_Score=346, Evalue=2e-95, Organism=Homo sapiens, GI38505218, Length=345, Percent_Identity=39.1304347826087, Blast_Score=249, Evalue=3e-66, Organism=Caenorhabditis elegans, GI17562446, Length=336, Percent_Identity=38.9880952380952, Blast_Score=235, Evalue=2e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40746; Mature: 40615
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: PS00109 PROTEIN_KINASE_TYR ; PS00290 IG_MHC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATEHDPQSSQADYAAFEGTRAVGDAQRFDVDALAAWLAKHVGGFAGPLAVEQFKGGQSN CCCCCCCCCCCCCHHHHCCCHHCCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC PTFKLVTPARSYVLRAKPAPAAKLLPSAHAIEREYRVMAALAGTGVPVAPMLARCDDESV CCEEEECCCHHHEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHH IGRAFYVMAFVDGRVLWDPSLPGMTPAERGRHYDEMNRVIAALHSIDPQAVGLADYGKPG HHHHHHHHHEECCEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH NYLARQIARWSKQYLASETEPIDAMRRLIDWLPQHLRPESGRDARVSIVHGDYRLDNLIF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEHHHEEE DAHAPRVLAVLDWELSTLGDPLADFAYHCMAWHVAPERFRGIAGLDLRSLGIPDEAQYVA ECCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHCCCCCHHHHHH RYCERTGLTMPENWNFYLAYNMFRIAAILQGIMKRVADGTASSAQALDAGRRARPMAELA HHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHCCHHHHHH WRYAQHAR HHHHHHCC >Mature Secondary Structure ATEHDPQSSQADYAAFEGTRAVGDAQRFDVDALAAWLAKHVGGFAGPLAVEQFKGGQSN CCCCCCCCCCCCHHHHCCCHHCCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC PTFKLVTPARSYVLRAKPAPAAKLLPSAHAIEREYRVMAALAGTGVPVAPMLARCDDESV CCEEEECCCHHHEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHH IGRAFYVMAFVDGRVLWDPSLPGMTPAERGRHYDEMNRVIAALHSIDPQAVGLADYGKPG HHHHHHHHHEECCEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH NYLARQIARWSKQYLASETEPIDAMRRLIDWLPQHLRPESGRDARVSIVHGDYRLDNLIF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEHHHEEE DAHAPRVLAVLDWELSTLGDPLADFAYHCMAWHVAPERFRGIAGLDLRSLGIPDEAQYVA ECCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCHHHCCCCCHHHHHH RYCERTGLTMPENWNFYLAYNMFRIAAILQGIMKRVADGTASSAQALDAGRRARPMAELA HHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHCCHHHHHH WRYAQHAR HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA