| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is ygfF [H]
Identifier: 53718822
GI number: 53718822
Start: 1371117
End: 1371932
Strand: Reverse
Name: ygfF [H]
Synonym: BPSL1186
Alternate gene names: 53718822
Gene position: 1371932-1371117 (Counterclockwise)
Preceding gene: 53718823
Following gene: 53718821
Centisome position: 33.67
GC content: 74.02
Gene sequence:
>816_bases GTGCCTTTCCCCTCTTTCCGCCCAAACGCGCGCGCCGCGCGGGCCGAGGTCCATGCAATGACGAACACGCAACGCAAAGT CGTCCTCATCACCGGCGCGAGCCGCGGCATCGGCCGCGCGAGCGCGCTGCTCGCCGCCGCGCGCGGCTGGTCGGTCGGCA TCAACTACGCGCGCGACGCGGCCGCCGCCGAAGCGACCGCCGACGCGGTGCGCGCCGCGGGCGCGCAGGCGTGCGTCGTG CGCGGCGACGTCGCGCACGAAGCCGACGTGATCCACATGTTCGACGCGGTGCAGTCCGCCTTCGGCCGCCTCGACGCGCT CGTCAACAACGCGGGAATCGTCGCGCCGTCGCTGCCGCTCGCCGACATGGACATCGCGCGCCTGAAGCGCGTGTTCGACA CCAACGTGCTCGGCGCGTATCTGTGCGCGCGCGAGGCCGCGCGCCGGCTGTCGACCGATCGCGGCGGCGGGGGCGGCGCG ATCGTCAACGTGTCGTCGATCGCCGCGCGGCTCGGCTCGCCGAACGAGTATGTCGACTATGCGGGCTCGAAGGGCGCGGT CGACACGCTGACGCTCGGCCTCGCGAAGGAACTCGGCCCGCACGGCGTGCGCGTGAATGCGGTGCGCCCGGGCCTCATCG CCACCGAGATCCATGCGAGCGGCGGGCAGCCCGGCCGCGCCGAGCGGCTCGGCGCGCAGACGCCGCTCGGCCGCGCGGGC GATGCCGACGAGGTCGCCGAGACGATCGTGTGGCTGTTGAGCGACGCGGCGTCGTACGTGACGGGCGCGTTGCTCGACGT CGGCGGCGGACGCTGA
Upstream 100 bases:
>100_bases CCCGGCGGGGCGGTTTTCGCGGCGTCAGATCGCGAACGCGCCGTCGCCGGCTGCCTCGTAGATACGATACCGCGCGGCCA CGGCATGCGAGGCTCGCGCG
Downstream 100 bases:
>100_bases CGCCGCGGCCGCGCCATCGCGCGCCGCTGTCTAAGGCAGGCCGTCCTTGGCCGCCTTTGGCCGGCTGGCCGCCGCGCGCG GGCGGCGCGTATCCGCCGCG
Product: glucose-1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MPFPSFRPNARAARAEVHAMTNTQRKVVLITGASRGIGRASALLAAARGWSVGINYARDAAAAEATADAVRAAGAQACVV RGDVAHEADVIHMFDAVQSAFGRLDALVNNAGIVAPSLPLADMDIARLKRVFDTNVLGAYLCAREAARRLSTDRGGGGGA IVNVSSIAARLGSPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIATEIHASGGQPGRAERLGAQTPLGRAG DADEVAETIVWLLSDAASYVTGALLDVGGGR
Sequences:
>Translated_271_residues MPFPSFRPNARAARAEVHAMTNTQRKVVLITGASRGIGRASALLAAARGWSVGINYARDAAAAEATADAVRAAGAQACVV RGDVAHEADVIHMFDAVQSAFGRLDALVNNAGIVAPSLPLADMDIARLKRVFDTNVLGAYLCAREAARRLSTDRGGGGGA IVNVSSIAARLGSPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIATEIHASGGQPGRAERLGAQTPLGRAG DADEVAETIVWLLSDAASYVTGALLDVGGGR >Mature_270_residues PFPSFRPNARAARAEVHAMTNTQRKVVLITGASRGIGRASALLAAARGWSVGINYARDAAAAEATADAVRAAGAQACVVR GDVAHEADVIHMFDAVQSAFGRLDALVNNAGIVAPSLPLADMDIARLKRVFDTNVLGAYLCAREAARRLSTDRGGGGGAI VNVSSIAARLGSPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIATEIHASGGQPGRAERLGAQTPLGRAGD ADEVAETIVWLLSDAASYVTGALLDVGGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=36.3265306122449, Blast_Score=118, Evalue=5e-27, Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=32.9317269076305, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=35.3174603174603, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=29.4354838709677, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=34.6733668341709, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=30.3501945525292, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=32.2709163346614, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=29.1338582677165, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=30.5220883534137, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=31.8407960199005, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI209862901, Length=199, Percent_Identity=31.1557788944724, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI19923983, Length=199, Percent_Identity=31.1557788944724, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4503301, Length=220, Percent_Identity=26.8181818181818, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI66933014, Length=182, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=52.6530612244898, Blast_Score=271, Evalue=4e-74, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=35.1020408163265, Blast_Score=134, Evalue=9e-33, Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=34.412955465587, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.5381526104418, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=31.3008130081301, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=30, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=34.9593495934959, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=29.718875502008, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=27.5193798449612, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=32.3076923076923, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=30.078125, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787891, Length=255, Percent_Identity=29.0196078431373, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=24.4979919678715, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=39.1304347826087, Blast_Score=138, Evalue=4e-33, Organism=Caenorhabditis elegans, GI71994600, Length=261, Percent_Identity=36.7816091954023, Blast_Score=123, Evalue=9e-29, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=35.3658536585366, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=33.8345864661654, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=34.0996168582375, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=33.0769230769231, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=32.5581395348837, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=33.6032388663968, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=34.469696969697, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=31.9548872180451, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=34.5864661654135, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=29.6992481203008, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=32.3886639676113, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=31.1740890688259, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=32, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=31.7343173431734, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=32.824427480916, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17562910, Length=257, Percent_Identity=31.1284046692607, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.8007662835249, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=30.7086614173228, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=30.9160305343511, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=31.8897637795276, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=31.4176245210728, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.9433962264151, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=29.2, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=31.5384615384615, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=31.8007662835249, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17538182, Length=224, Percent_Identity=31.6964285714286, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17561272, Length=246, Percent_Identity=31.3008130081301, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI71982365, Length=209, Percent_Identity=30.622009569378, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558628, Length=197, Percent_Identity=31.4720812182741, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17555612, Length=208, Percent_Identity=32.6923076923077, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=29.3650793650794, Blast_Score=82, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=234, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=29.5336787564767, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=196, Percent_Identity=27.0408163265306, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=39.2857142857143, Blast_Score=141, Evalue=5e-34, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=38.7596899224806, Blast_Score=137, Evalue=7e-33, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=37.8486055776892, Blast_Score=134, Evalue=6e-32, Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=38.3720930232558, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24644337, Length=175, Percent_Identity=40.5714285714286, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=32.6693227091633, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=33.6, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=32.9411764705882, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI281364494, Length=207, Percent_Identity=31.4009661835749, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI24641232, Length=205, Percent_Identity=30.7317073170732, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI17737361, Length=233, Percent_Identity=29.6137339055794, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571387, Length=247, Percent_Identity=29.1497975708502, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24641388, Length=203, Percent_Identity=33.0049261083744, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24648693, Length=212, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21355889, Length=212, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24584752, Length=196, Percent_Identity=30.6122448979592, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI116007236, Length=241, Percent_Identity=27.3858921161826, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357673, Length=213, Percent_Identity=29.1079812206573, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24663911, Length=237, Percent_Identity=28.2700421940928, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27743; Mature: 27611
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFPSFRPNARAARAEVHAMTNTQRKVVLITGASRGIGRASALLAAARGWSVGINYARDA CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHH AAAEATADAVRAAGAQACVVRGDVAHEADVIHMFDAVQSAFGRLDALVNNAGIVAPSLPL HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ADMDIARLKRVFDTNVLGAYLCAREAARRLSTDRGGGGGAIVNVSSIAARLGSPNEYVDY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHCCCHHHHHC AGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIATEIHASGGQPGRAERLGAQTPLGRAG CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHCCCCCCCCCCC DADEVAETIVWLLSDAASYVTGALLDVGGGR CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PFPSFRPNARAARAEVHAMTNTQRKVVLITGASRGIGRASALLAAARGWSVGINYARDA CCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHH AAAEATADAVRAAGAQACVVRGDVAHEADVIHMFDAVQSAFGRLDALVNNAGIVAPSLPL HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ADMDIARLKRVFDTNVLGAYLCAREAARRLSTDRGGGGGAIVNVSSIAARLGSPNEYVDY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHCCCHHHHHC AGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIATEIHASGGQPGRAERLGAQTPLGRAG CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHCCCCCCCCCCC DADEVAETIVWLLSDAASYVTGALLDVGGGR CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]