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The map label for this gene is ydcO [H]

Identifier: 53718731

GI number: 53718731

Start: 1266656

End: 1267873

Strand: Reverse

Name: ydcO [H]

Synonym: BPSL1096

Alternate gene names: 53718731

Gene position: 1267873-1266656 (Counterclockwise)

Preceding gene: 53718732

Following gene: 53718730

Centisome position: 31.12

GC content: 71.18

Gene sequence:

>1218_bases
ATGAGCAGCCAGCCGCCCGCCTCCAACCTGCCGCGCGCCGCCGCGCGAGCGAATTTTTTCACCGACACGTCGCCGTCCGC
GCTCGTCGCGGGCTTCGTCGCGATGATGACGGGCTATACGAGCTCGCTCGTGCTGATGTTCCAGGCCGGCCGCGCCGCGC
ACCTGAGCGACGCGCAGATCTCGTCGTGGATCTGGGCGCTGTCGATCGGCATGGCCGTGACGACGATCGGGTTGTCGCTG
CGGTATCGCGCGCCGATCGTCGTCGCGTGGTCGACGCCCGGCGCGGCGCTCCTCGTCGCGTCGCTGCCCGGCGTCGCGTA
TTCGGACGCGATCGGCGCGTTCGTCGTCTGCGCGCTGCTGCTCGCCGCCGTCGGCGCGAGCGGCCTGTTCGACACGCTGA
TGCGCCGGATTCCGTCCGGCATCGCCGCTGCCCTCCTCGCCGGCATCCTGTTCGAGATCGGCATCGAGATCTTCCGCGCC
GCGCAGTTCCAGACCGCGCTCGTGCTCGCGATGTTCTTCACGTACCTGATCGTCAAGCGCGCGGCGCCGCGCTATGCGAT
CGTCGCGACGCTCGCCGCGGGCGTCGCGGCCGCGGGCGCGCTCGGCCTGCTCGACTTCGGCCGCTTTCACGTCGCGCTCG
CGCGGCCCGTGTTCACGGCGCCGTCGTTCTCGATCCCGGCGATCGTGAGCATCGGCATTCCGCTGTTCGTCGTCGCGATG
GCGTCGCAGAACGTGCCCGGCATCGCGGTGCTGCGCGCGGACGGCTACGCCACGCCGTCGTCGCCGCTCATCGCGACGAC
GGGCATCGCGTCCGTCGTGCTCGCGCCGTTCGGCTCGCACGGAATCAACCTCGCCGCGATCACGGCCGCGATCTGCACCG
GCCCCGAGGCGCACGACGATCGCGCGAAGCGCTACACGGCGGCCGTCTGGTGCGGCACGTTCTATCTCGTCGCGGGCGTG
TTCGGCGCGACGATCGCCGCGCTCTTCGGCGCGTTGCCGAAGGCGCTCGTCGTATCGGTGGCCGCGCTCGCGCTGTTCGG
CTCGATCATGAGCGGCCTCACCAACGCGATGCAGGACGCGCGCCAGCGCGAAGCCGCGCTCGTCACGTTCATGGTGACCG
CCTCCGGCCTCACGCTGCTGTCGATCGGCTCGGCATTCTGGGGGCTCGTGGCGGGCGTGCTCACGCAAGCGATCCTCAAC
GCGCGCCGCACCGCCTGA

Upstream 100 bases:

>100_bases
GCAAGTGACGCGCCCGCCGCGCCCGCCGCGCGCGTCGCCCCGCCGATTCCGCCGTTTTTCAACGCCTCACCTTCACCACC
CCGGACCCGACGTTTCACCG

Downstream 100 bases:

>100_bases
CGCCGGTCGCGGCACGCGCGGCCGGATCGGGCACGGTTCGTGCGCGATCCGCATGCTTCGCATGGGCCGCCGCGCCGCGC
ACGCGGTAGGCGGCCGTTCG

Product: putative transport related membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSSQPPASNLPRAAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMAVTTIGLSL
RYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRA
AQFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGV
FGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILN
ARRTA

Sequences:

>Translated_405_residues
MSSQPPASNLPRAAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMAVTTIGLSL
RYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRA
AQFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGV
FGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILN
ARRTA
>Mature_404_residues
SSQPPASNLPRAAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMAVTTIGLSLR
YRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALLLAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAA
QFQTALVLAMFFTYLIVKRAAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAMA
SQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDDRAKRYTAAVWCGTFYLVAGVF
GATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDARQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNA
RRTA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=376, Percent_Identity=46.0106382978723, Blast_Score=317, Evalue=8e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41440; Mature: 41309

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQPPASNLPRAAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQI
CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCHHH
SSWIWALSIGMAVTTIGLSLRYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALL
HHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCEEHEECCCCCHHHHHHHHHHHHHHH
LAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKR
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHH
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDD
HCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCH
RAKRYTAAVWCGTFYLVAGVFGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNARRTA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSQPPASNLPRAAARANFFTDTSPSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQI
CCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCHHH
SSWIWALSIGMAVTTIGLSLRYRAPIVVAWSTPGAALLVASLPGVAYSDAIGAFVVCALL
HHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCEEHEECCCCCHHHHHHHHHHHHHHH
LAAVGASGLFDTLMRRIPSGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKR
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPRYAIVATLAAGVAAAGALGLLDFGRFHVALARPVFTAPSFSIPAIVSIGIPLFVVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHHHH
ASQNVPGIAVLRADGYATPSSPLIATTGIASVVLAPFGSHGINLAAITAAICTGPEAHDD
HCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCH
RAKRYTAAVWCGTFYLVAGVFGATIAALFGALPKALVVSVAALALFGSIMSGLTNAMQDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQREAALVTFMVTASGLTLLSIGSAFWGLVAGVLTQAILNARRTA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]