Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 53718641

GI number: 53718641

Start: 1162474

End: 1163121

Strand: Reverse

Name: yiaD [H]

Synonym: BPSL0999

Alternate gene names: 53718641

Gene position: 1163121-1162474 (Counterclockwise)

Preceding gene: 53718647

Following gene: 53718640

Centisome position: 28.55

GC content: 69.75

Gene sequence:

>648_bases
ATGAATACCAAAATCGCGACGCGCTTGTCCGTTTTCGCTCTCGCCGGCGCCCTGCTGGCGGGTTGCGCAACCCAGCAAGG
CACCAACACGGCTGTCGGCACCGGCACGGGCGCCGCGCTCGGCGCGGGCATCGGCGCGCTCGCTGGCGGCGGCAAGGGCG
CGGCGATCGGCGCCGGCGTCGGCGCGCTCGTCGGCGGCGTGACGGGTTACAACTGGCAAGCGATCAAGAACAAGCTCGCG
CCGTCGGCGCAGCAAACGGGCACGCAGGTCACCGAACAGCCGGACGGCTCGCTCAAGCTGAACGTGCCCAGCTCGGTCAC
GTTCGCGACCGACCAGTACGCGATCACGCCGGCGTTCACGCCGCTGCTGAACGACCTCGCGACGACGCTGAACCAGAACC
CGCAGATCACCGCGTCGGTCGTCGGCTACACCGACAGCACGGGCTCGGCCGCGCACAATCAAACGCTGTCGCAAAATCGC
GCGCAAAGCGTCGTGAACGCGCTCGCGCAGCGCGGCGTCGCGGCGAACCGCCTGTCCGCGCAAGGCATGGGCGCGTCGAA
CCCGATCGCCGACAACGCAACGGAAGCCGGCCGCGCGCAAAACCGCCGCGTCGAGATCTACCTGCGCGCGCCGCAAGCGG
CGCAGTAA

Upstream 100 bases:

>100_bases
GCCCGCGCGCCCGCACGATGGTCGTCGGCGCGCGGGTCGCTCCCGCCGAAAGAGCAGTTCTTTTTTGTTCTTGTCGAGTC
ACTCAAGAGAGGAAACCAAG

Downstream 100 bases:

>100_bases
ATCCGACCGCCTCGGAGAATGGCGCGCCAAGCCCCGTCGCACAAGGCTTTCCGGGCGGTTCGTAACAACTCGAAAAATTT
TTCGAACTTCTTGCGAGCCG

Product: OmpA family transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNTKIATRLSVFALAGALLAGCATQQGTNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNR
AQSVVNALAQRGVAANRLSAQGMGASNPIADNATEAGRAQNRRVEIYLRAPQAAQ

Sequences:

>Translated_215_residues
MNTKIATRLSVFALAGALLAGCATQQGTNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNR
AQSVVNALAQRGVAANRLSAQGMGASNPIADNATEAGRAQNRRVEIYLRAPQAAQ
>Mature_215_residues
MNTKIATRLSVFALAGALLAGCATQQGTNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNR
AQSVVNALAQRGVAANRLSAQGMGASNPIADNATEAGRAQNRRVEIYLRAPQAAQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=206, Percent_Identity=42.7184466019417, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=37.7049180327869, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788957, Length=117, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21432; Mature: 21432

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKIATRLSVFALAGALLAGCATQQGTNTAVGTGTGAALGAGIGALAGGGKGAAIGAGV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCCHHHHH
GALVGGVTGYNWQAIKNKLAPSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFT
HHHHHCCCCCCHHHHHHHCCCCHHHHCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHH
PLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNRAQSVVNALAQRGVAANRLSA
HHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
QGMGASNPIADNATEAGRAQNRRVEIYLRAPQAAQ
CCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNTKIATRLSVFALAGALLAGCATQQGTNTAVGTGTGAALGAGIGALAGGGKGAAIGAGV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCCHHHHH
GALVGGVTGYNWQAIKNKLAPSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYAITPAFT
HHHHHCCCCCCHHHHHHHCCCCHHHHCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHH
PLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNRAQSVVNALAQRGVAANRLSA
HHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
QGMGASNPIADNATEAGRAQNRRVEIYLRAPQAAQ
CCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]