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The map label for this gene is yafC [H]

Identifier: 53718473

GI number: 53718473

Start: 970247

End: 971131

Strand: Reverse

Name: yafC [H]

Synonym: BPSL0835

Alternate gene names: 53718473

Gene position: 971131-970247 (Counterclockwise)

Preceding gene: 53718476

Following gene: 53718472

Centisome position: 23.83

GC content: 71.64

Gene sequence:

>885_bases
ATGGAAAGTCTGAGCGGGTTCGTCGTCTTCGTGCAGGTGGCCGAGACCCGCAGCTTCGTCGCGGCGGCGCGTGCGCTCGG
CGTGTCCGCGTCGGCCGTCGGCAAGCGGATCGCGCGGCTCGAAGCGCGCCTGAACGTGCGCCTGTTCCATCGCAGCACGC
GCAGCATCGCGCTGACGGCCGAAGGCGCGCGCTTTCTCGAGCGATGCCGGCGCGTGCTCGCGGAAATCGAGGAGGCCGAG
CAGGAGCTGTCGCGCAGCGCGCACGCGCCGAGCGGCCGGCTGCGCGTGAGCCTGCCCGCGCTCAGCGCGCCCGTGCTGCC
CGTGCTCGCCGATTTCATGGCGGCGTACCCGGACATCCAGCTCGACCTCGATTTCACCGACCGGCTCGTCGACGTGATCG
ACGAAGGCTTCGACGCGGTCGTGCGCGGCGGCGAGCCGCGCGATTCGCGGCTGTCCGCGCGGCGGCTCGGCACGTTCGCG
CAGGTCGTCGTCGGCTCGCCCGACTATTTCGCGCGTCGCGGCACGCCGCGCACGCCCGCCGATCTCGCGCACCACACGTG
CCTGCTCTATCGCTTCCCGACCACCGGCAAGCTCGAGCGCTGGCCGCTGCGGCCCGCGCCGGGCGACGCCGACGTCGAGC
CGCCGCGGTCGATGATCTGCAACAACGTCGAAACGCGCGTGTGTTTCGCGATTCGCGGCCGCGGACTCGCATGCGTGCCG
GATTTCGCGGTGCGCGACGAACTCGCGAGCGCACGGCTGCGCACCGTGCTCGACGCGTACATCGAGCGCCCGCAGACGTT
CCACGTGCTGTGGCCGTCGGGGCGGCACGCTTCGCCGAAGCTGCGCGCGTTCGTCGATTTCATCGTCGGGCGCATGTTCG
CGTAG

Upstream 100 bases:

>100_bases
GCAGCCGGCGAATGAAGAAAAACTAGGATAGAGTTCCTGACACTGCGGACATTGAAGTCCGCAATCAAAAGCGAATCGGA
AACCAAACGGGAGCGGTCGA

Downstream 100 bases:

>100_bases
GCGCGGCGCGCGGCAAGCGGCGCGCCGCCGCCGCGCCCGCCCGGAGCACGTGGCCGCCGGCGTCGCGCGGACGCGGCGCG
CCGATGCGCACGGGCGCGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MESLSGFVVFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLERCRRVLAEIEEAE
QELSRSAHAPSGRLRVSLPALSAPVLPVLADFMAAYPDIQLDLDFTDRLVDVIDEGFDAVVRGGEPRDSRLSARRLGTFA
QVVVGSPDYFARRGTPRTPADLAHHTCLLYRFPTTGKLERWPLRPAPGDADVEPPRSMICNNVETRVCFAIRGRGLACVP
DFAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGRMFA

Sequences:

>Translated_294_residues
MESLSGFVVFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLERCRRVLAEIEEAE
QELSRSAHAPSGRLRVSLPALSAPVLPVLADFMAAYPDIQLDLDFTDRLVDVIDEGFDAVVRGGEPRDSRLSARRLGTFA
QVVVGSPDYFARRGTPRTPADLAHHTCLLYRFPTTGKLERWPLRPAPGDADVEPPRSMICNNVETRVCFAIRGRGLACVP
DFAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGRMFA
>Mature_294_residues
MESLSGFVVFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLERCRRVLAEIEEAE
QELSRSAHAPSGRLRVSLPALSAPVLPVLADFMAAYPDIQLDLDFTDRLVDVIDEGFDAVVRGGEPRDSRLSARRLGTFA
QVVVGSPDYFARRGTPRTPADLAHHTCLLYRFPTTGKLERWPLRPAPGDADVEPPRSMICNNVETRVCFAIRGRGLACVP
DFAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGRMFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=32.6315789473684, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=33.1034482758621, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=33.3333333333333, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=31.2080536912752, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=31.5614617940199, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=33.7979094076655, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=26.4084507042254, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=26.2068965517241, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790011, Length=255, Percent_Identity=24.3137254901961, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786448, Length=285, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=290, Percent_Identity=26.8965517241379, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787879, Length=136, Percent_Identity=30.1470588235294, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32537; Mature: 32537

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLSGFVVFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTA
CCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGARFLERCRRVLAEIEEAEQELSRSAHAPSGRLRVSLPALSAPVLPVLADFMAAYPDIQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCE
LDLDFTDRLVDVIDEGFDAVVRGGEPRDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPA
EECCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCHH
DLAHHTCLLYRFPTTGKLERWPLRPAPGDADVEPPRSMICNNVETRVCFAIRGRGLACVP
HHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCEECC
DFAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGRMFA
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESLSGFVVFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTA
CCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGARFLERCRRVLAEIEEAEQELSRSAHAPSGRLRVSLPALSAPVLPVLADFMAAYPDIQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCE
LDLDFTDRLVDVIDEGFDAVVRGGEPRDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPA
EECCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCHH
DLAHHTCLLYRFPTTGKLERWPLRPAPGDADVEPPRSMICNNVETRVCFAIRGRGLACVP
HHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCEECC
DFAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGRMFA
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]