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The map label for this gene is lsrR [H]

Identifier: 53718476

GI number: 53718476

Start: 973846

End: 974793

Strand: Reverse

Name: lsrR [H]

Synonym: BPSL0838

Alternate gene names: 53718476

Gene position: 974793-973846 (Counterclockwise)

Preceding gene: 53718477

Following gene: 53718473

Centisome position: 23.92

GC content: 71.2

Gene sequence:

>948_bases
GTGTCCAAGTCCTCCGAAAAACTCGATCTCGCGACGCGCGCCGCCTGGCTCTACTACGTCGCGGGCGACACGCAGAACGA
GATCGCCGAGAAGCTGCAGGTGTCGCGCCCCGTCGCGCAGCGCCTCGTCGCGTTCGCGGTCGAGAAGAACCTGATCCGCG
TGCGCGTCGACCACCGCATCGCCGATTGCCTCGATCTGGCCGCGCAGTTGTCCAAGCGCTACGGCCTCGCGATGTGCGAA
GTCGTGCCGATCGACGGCGACGCGCCCGATGCGATCGACCGCAAGCTCGCCGTCGCGGGCGCGCAGGTGATGGAGCGCTA
CCTGAACGAAGAAAGGCCGATGGTGATCGCGGTCAGCAGCGGCCGCACGCTGAAGGCCGCCGTCGCGCAGATCGCGCAGC
TCGAGCGGCCGCAGCACCGGCTCGTGTCGATGGTGGGCGCGATCGCGCAGGACGGCTCGTCGAACCCGTACGACGTCGCA
CAGCACATCTCCGAGAAGACGGGCGGCAAGCACTTCCTGCTGCCCGCGCCGCTGTTCGCGGACAGCGAGGCCGAACGCGC
GCAGTGGTGCAACCACCGGCTGTACCGGATCGTCGAGAAGCTGTCGGCGCAGGCCGACGTCGCGTTCGTCGGCGTCGGCA
ACATCGGCGCGCACTGCCCGCTTTTCGAGGACGGCTTCATCACCGCCGCCGAGCTCGGCGAGATGGTCGAGCTCGGCGCG
GTGGCCGAGATGCTCGGCCTGCCGATCGACGCGCAGGGGCGGCCGATCGTCGCGTCGACGAGCACGCGCGTGACGAGCGT
GGCGCTCGATGCGCCGCCGTCGCGCCCGACGATCGGCTTCGCGGGCGGGCCGCGCAAGCGCGCCGCGGTGCTCGCCGCGC
TGCGCGGCCGCTGGCTCTCGGGGCTCGTGACCGACGAGACCTGCGCACGCGCGGCGCTCGCCGAGTAG

Upstream 100 bases:

>100_bases
CGCGGCTCGCGTGAGCGCGTTGCGCTACAGTGCGAATTTTCCCGGCGCGCGACGGCCGGCCTGATGCCGCCGCGCGCGCC
CGACCTGAGATTCCGCCATC

Downstream 100 bases:

>100_bases
CCGAGGCGAATGGCCGGCTCGGGCAGCCGGGCCGAGTAGCCAGTCGAGCCGAGTAGCCGAGCGCCTGCGTCGAGCGGTCG
AACGCGTGCGCCGAACAGTT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRIADCLDLAAQLSKRYGLAMCE
VVPIDGDAPDAIDRKLAVAGAQVMERYLNEERPMVIAVSSGRTLKAAVAQIAQLERPQHRLVSMVGAIAQDGSSNPYDVA
QHISEKTGGKHFLLPAPLFADSEAERAQWCNHRLYRIVEKLSAQADVAFVGVGNIGAHCPLFEDGFITAAELGEMVELGA
VAEMLGLPIDAQGRPIVASTSTRVTSVALDAPPSRPTIGFAGGPRKRAAVLAALRGRWLSGLVTDETCARAALAE

Sequences:

>Translated_315_residues
MSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRIADCLDLAAQLSKRYGLAMCE
VVPIDGDAPDAIDRKLAVAGAQVMERYLNEERPMVIAVSSGRTLKAAVAQIAQLERPQHRLVSMVGAIAQDGSSNPYDVA
QHISEKTGGKHFLLPAPLFADSEAERAQWCNHRLYRIVEKLSAQADVAFVGVGNIGAHCPLFEDGFITAAELGEMVELGA
VAEMLGLPIDAQGRPIVASTSTRVTSVALDAPPSRPTIGFAGGPRKRAAVLAALRGRWLSGLVTDETCARAALAE
>Mature_314_residues
SKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRIADCLDLAAQLSKRYGLAMCEV
VPIDGDAPDAIDRKLAVAGAQVMERYLNEERPMVIAVSSGRTLKAAVAQIAQLERPQHRLVSMVGAIAQDGSSNPYDVAQ
HISEKTGGKHFLLPAPLFADSEAERAQWCNHRLYRIVEKLSAQADVAFVGVGNIGAHCPLFEDGFITAAELGEMVELGAV
AEMLGLPIDAQGRPIVASTSTRVTSVALDAPPSRPTIGFAGGPRKRAAVLAALRGRWLSGLVTDETCARAALAE

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=307, Percent_Identity=27.0358306188925, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082414, Length=315, Percent_Identity=26.6666666666667, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33817; Mature: 33686

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRI
CCCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
ADCLDLAAQLSKRYGLAMCEVVPIDGDAPDAIDRKLAVAGAQVMERYLNEERPMVIAVSS
HHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
GRTLKAAVAQIAQLERPQHRLVSMVGAIAQDGSSNPYDVAQHISEKTGGKHFLLPAPLFA
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCC
DSEAERAQWCNHRLYRIVEKLSAQADVAFVGVGNIGAHCPLFEDGFITAAELGEMVELGA
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHH
VAEMLGLPIDAQGRPIVASTSTRVTSVALDAPPSRPTIGFAGGPRKRAAVLAALRGRWLS
HHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHH
GLVTDETCARAALAE
CCCCHHHHHHHHHCC
>Mature Secondary Structure 
SKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRI
CCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
ADCLDLAAQLSKRYGLAMCEVVPIDGDAPDAIDRKLAVAGAQVMERYLNEERPMVIAVSS
HHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
GRTLKAAVAQIAQLERPQHRLVSMVGAIAQDGSSNPYDVAQHISEKTGGKHFLLPAPLFA
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCC
DSEAERAQWCNHRLYRIVEKLSAQADVAFVGVGNIGAHCPLFEDGFITAAELGEMVELGA
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHH
VAEMLGLPIDAQGRPIVASTSTRVTSVALDAPPSRPTIGFAGGPRKRAAVLAALRGRWLS
HHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHH
GLVTDETCARAALAE
CCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA