| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53718254
Identifier: 53718254
GI number: 53718254
Start: 690580
End: 693099
Strand: Reverse
Name: 53718254
Synonym: BPSL0611
Alternate gene names: NA
Gene position: 693099-690580 (Counterclockwise)
Preceding gene: 53718255
Following gene: 53718253
Centisome position: 17.01
GC content: 72.54
Gene sequence:
>2520_bases ATGAAATCCGCGCCGGATCGCGTGGCGCGCGGCGCCGCCCAATGGACGTTGATCGCGACGCCCGCTGGCGCGATCGCGCG ACCGAGCGAGCTCGGCGAAGCCGGCTGGTGCGCGGCAAGCGTGCCCGGCACCGTCGCGCAGGCGCTCGCCGCCGCGCGCC GCTTCGATCCCGCGCATCCGTACCCGCTCGGCGACAGCGACTACTGGTACCGCACGACGCTGCACGGCGCTGGGCCGCGC ATCGTCCGGCTCAACGGCCTCGCGACGATCGCCGAGGTCTGGCTCGACGACACGCTGCTGCTCTGCTCGGACAACATGTA CGTCGCGCACGATCTGCCCGTGACGCTCGGCGGCGCGCACCGTCTCGCGCTCTGCTTTCGCTCGCTCGACCGGCACCTCG CCGAGCACCCGCCGCGCGGCCGCGCGCGCTGGCGCACGCGCCTCGTCGATACGCCCGCGCTGCGCGGCGTGCGCGCGACG TTCCTCGGCCGGATGCCGGGCTGGTTCCCGGCGATCGAGCCGGTCGGCCCGTGGCGTCCGATCGACATCGTGAATCCGGC CGGGGCGCCGACGATCGTGCACGACACGCTGCGCGCGACGCTCGACGGGCGCGACGGCGTGCTCGACGCGACGCTCGAGT TCGCCGCGCCGCTTTCGAGAACGGCGCGCGCGCAGCTCGTCTGCGGCGAGCATGCGGCGCCGCTCGAAGCGACCGGTCCG CGCACCGCGCGCGCAACGCTCAGGATTGCGAACGTCACGCCGTGGTGGCCGCATACGCACGGCGAACCCGCGTTGTACGA CGTCGGCGTGGCAATCGGCGGCGCGACGATTGCGCTCGCCAAAACGGGCTTTCGCACGCTCGCCGTCGAGCGCGGCGCGG ACGGCCGCGGCTTCGCGCTATCGGTCAACGGCACGCCGCTTTTCGCGCGCGGCGCATGCTGGACGAGCGCCGACCCCGTC GGCCTGCACGCCGATGCGCCCGCCTATCGCCGCGCGCTCGTGCTCGCGCGCGACGCCGGCTGCAACATGATCCGCGTCGG CGGCACGATGATCTACGAGGCCGACGCGTTCTACGCGCTCTGCGACGAGTTGGGGCTGCTCGTGTGGCAAGACTTCATGC TCGCGAACTTCGACTATCCGTCGAACGATCCGCGCTTTGCCGAATCGCTCAAGCGCGAGGCCGAGCAGTTCCTCGGCCGG CACATGGCGCGGCCGTCGATCGCGGTGCTGTGCGGCGGCAGCGAGATCGCGCAGCAGGCCGCGATGGTCGGCCTCGCGCC CGACGAGCGCCGCGTGCCCGCCACCGAGCAATGGCTCGCCGAACTGTGCGCCGCGCATCGCCCCGATGCCGCGTACGTCA GCGATTCGCCGCACGGCGGCGTGCTGCCGTTCGCGCCGCGCGAGGGCGTTACGCACTACTACGGCGTCGGCGCGTACCTG CGCCCTCCCGAGGATGCACGCCGCGCCGGCGTGCGCTTCGCGAGCGAGTGCCTCGCGTTCGCGAACGTGCCGTGCGACGC GACGCTCGCCTCGATCGGCTCGCCCGCCGCGCACGAGCCGGCCTGGAAACGCGCGGTGCCGCGCGATCCCGGCGCGCCGT GGGATTTCGACGACGTGCGCGATCACTACCTGCGCGCGCTGTACGGCGTCGAGCCCGCGCGCTTGCGCAGCATCGATCCC GCCCGCTATCTGACGCTGTCGCGCGCCGTCGTCGCCGATCTCGTCGGGGAGACGCTCGCCGAGTGGCGGCGCGTCGGCTC CTCGTGCGCGGGCGCGCTCGTCTGGCAGTTCCAGGACGTGATGCCGGGCGCGGGCTGGGGCCTCGTCGACGCGCACGGCC GGCCGAAATCCGCATGGCATGCGTTGCGGCGCGTATCGCAGCCGCGGCAGATCCTGCTGACCGACGAAGGGCTCAACGGC CTCGACGTGCACGTGCTCAACGATGCGCCCGCGCCGCTCGAAGCCCGCATCGAGCTCGTCGCGCTGCGCGACGGCAAGAC GCCGATCGCGCGCGCGGCCCGCACGGTGCACGTCGCCGCCCACGCGGGCCAATGCGTGAATTCGGCCGACCTGCTCGGCC GATTCTTCGATTTCACCTATGCGTACCGCTTCGGCCCGCGCGAGCACGACGTCGTGATCGCATCGCTGTACGCGAGCGAC GGCGCGCTGCTGTCGCAGGCGTTCCACTTTCCCGAACGCACCGCGCCGACCGTGTTCGAGCGCGGCGACATCGGTCTCGA GGCGAGCGCCGCGTATCGAGACGGCCGCTGGTGCGTGCAAGTGCAGACGCGCACGTTCGCGCGCTACGTGCATGTGTGCG CGCCGGGCCTGCTGCCCGACATCGACTGGTTCCATCTCGCGCCGGGTGCCGCCGCGCGGATCGAGTTCGCCGCCGACCCT CATTCTCCCGCTCCCGACCACCGCCCGCCCGAAGCCGACGCGGCCCACTGCGCCCCGCCCGCGATCGAGGTGCGCGCACT CAATTCCAACAAGACCATTCGCCCGAGGATAGAAAATTGA
Upstream 100 bases:
>100_bases TCATCGACGGCGTCGCGCGTATCGCGCCGCCCGGCAGGGTCGAGCCGAATCCGCCGTTCGGCACGCTGTACGTGCCGCCG AGGCCCGTTACCGCGGTCCG
Downstream 100 bases:
>100_bases GACCAGTTCGATTCGACGATTGCCTGGGATGGCTGCATGAGGGCCGCACGCGGCGCGGCGCCGTGATCTGCGAGGCGCTC GGCCATGAGGCGCTGTGGAC
Product: glycosyl hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Mannosidase Protein; Glycoside Hydrolase; Mannosidase; Glycoside Hydrolase Family 2 Protein; Glycosidase; Beta-Galactosidase/Beta-Glucuronidase; Beta-Glucuronidase; Exported Glycosyl Hydrolase; Beta-Galactosidase/Beta- Glucuronidase Family Protein; O-Glycosyl Hydrolase; Beta-Mannosidase Man2A; Beta-Galactosidase/Beta; Glycosyl Hydrolase; Mannosylglycoprotein Endo-Beta-Mannosidase; Beta-Mannosidase-Related Protein; BETA-Mannosidase Protein; Glycosyl Hydrolase Family Protein; Glycoside Hydrolase Family 2 TIM Barrel
Number of amino acids: Translated: 839; Mature: 839
Protein sequence:
>839_residues MKSAPDRVARGAAQWTLIATPAGAIARPSELGEAGWCAASVPGTVAQALAAARRFDPAHPYPLGDSDYWYRTTLHGAGPR IVRLNGLATIAEVWLDDTLLLCSDNMYVAHDLPVTLGGAHRLALCFRSLDRHLAEHPPRGRARWRTRLVDTPALRGVRAT FLGRMPGWFPAIEPVGPWRPIDIVNPAGAPTIVHDTLRATLDGRDGVLDATLEFAAPLSRTARAQLVCGEHAAPLEATGP RTARATLRIANVTPWWPHTHGEPALYDVGVAIGGATIALAKTGFRTLAVERGADGRGFALSVNGTPLFARGACWTSADPV GLHADAPAYRRALVLARDAGCNMIRVGGTMIYEADAFYALCDELGLLVWQDFMLANFDYPSNDPRFAESLKREAEQFLGR HMARPSIAVLCGGSEIAQQAAMVGLAPDERRVPATEQWLAELCAAHRPDAAYVSDSPHGGVLPFAPREGVTHYYGVGAYL RPPEDARRAGVRFASECLAFANVPCDATLASIGSPAAHEPAWKRAVPRDPGAPWDFDDVRDHYLRALYGVEPARLRSIDP ARYLTLSRAVVADLVGETLAEWRRVGSSCAGALVWQFQDVMPGAGWGLVDAHGRPKSAWHALRRVSQPRQILLTDEGLNG LDVHVLNDAPAPLEARIELVALRDGKTPIARAARTVHVAAHAGQCVNSADLLGRFFDFTYAYRFGPREHDVVIASLYASD GALLSQAFHFPERTAPTVFERGDIGLEASAAYRDGRWCVQVQTRTFARYVHVCAPGLLPDIDWFHLAPGAAARIEFAADP HSPAPDHRPPEADAAHCAPPAIEVRALNSNKTIRPRIEN
Sequences:
>Translated_839_residues MKSAPDRVARGAAQWTLIATPAGAIARPSELGEAGWCAASVPGTVAQALAAARRFDPAHPYPLGDSDYWYRTTLHGAGPR IVRLNGLATIAEVWLDDTLLLCSDNMYVAHDLPVTLGGAHRLALCFRSLDRHLAEHPPRGRARWRTRLVDTPALRGVRAT FLGRMPGWFPAIEPVGPWRPIDIVNPAGAPTIVHDTLRATLDGRDGVLDATLEFAAPLSRTARAQLVCGEHAAPLEATGP RTARATLRIANVTPWWPHTHGEPALYDVGVAIGGATIALAKTGFRTLAVERGADGRGFALSVNGTPLFARGACWTSADPV GLHADAPAYRRALVLARDAGCNMIRVGGTMIYEADAFYALCDELGLLVWQDFMLANFDYPSNDPRFAESLKREAEQFLGR HMARPSIAVLCGGSEIAQQAAMVGLAPDERRVPATEQWLAELCAAHRPDAAYVSDSPHGGVLPFAPREGVTHYYGVGAYL RPPEDARRAGVRFASECLAFANVPCDATLASIGSPAAHEPAWKRAVPRDPGAPWDFDDVRDHYLRALYGVEPARLRSIDP ARYLTLSRAVVADLVGETLAEWRRVGSSCAGALVWQFQDVMPGAGWGLVDAHGRPKSAWHALRRVSQPRQILLTDEGLNG LDVHVLNDAPAPLEARIELVALRDGKTPIARAARTVHVAAHAGQCVNSADLLGRFFDFTYAYRFGPREHDVVIASLYASD GALLSQAFHFPERTAPTVFERGDIGLEASAAYRDGRWCVQVQTRTFARYVHVCAPGLLPDIDWFHLAPGAAARIEFAADP HSPAPDHRPPEADAAHCAPPAIEVRALNSNKTIRPRIEN >Mature_839_residues MKSAPDRVARGAAQWTLIATPAGAIARPSELGEAGWCAASVPGTVAQALAAARRFDPAHPYPLGDSDYWYRTTLHGAGPR IVRLNGLATIAEVWLDDTLLLCSDNMYVAHDLPVTLGGAHRLALCFRSLDRHLAEHPPRGRARWRTRLVDTPALRGVRAT FLGRMPGWFPAIEPVGPWRPIDIVNPAGAPTIVHDTLRATLDGRDGVLDATLEFAAPLSRTARAQLVCGEHAAPLEATGP RTARATLRIANVTPWWPHTHGEPALYDVGVAIGGATIALAKTGFRTLAVERGADGRGFALSVNGTPLFARGACWTSADPV GLHADAPAYRRALVLARDAGCNMIRVGGTMIYEADAFYALCDELGLLVWQDFMLANFDYPSNDPRFAESLKREAEQFLGR HMARPSIAVLCGGSEIAQQAAMVGLAPDERRVPATEQWLAELCAAHRPDAAYVSDSPHGGVLPFAPREGVTHYYGVGAYL RPPEDARRAGVRFASECLAFANVPCDATLASIGSPAAHEPAWKRAVPRDPGAPWDFDDVRDHYLRALYGVEPARLRSIDP ARYLTLSRAVVADLVGETLAEWRRVGSSCAGALVWQFQDVMPGAGWGLVDAHGRPKSAWHALRRVSQPRQILLTDEGLNG LDVHVLNDAPAPLEARIELVALRDGKTPIARAARTVHVAAHAGQCVNSADLLGRFFDFTYAYRFGPREHDVVIASLYASD GALLSQAFHFPERTAPTVFERGDIGLEASAAYRDGRWCVQVQTRTFARYVHVCAPGLLPDIDWFHLAPGAAARIEFAADP HSPAPDHRPPEADAAHCAPPAIEVRALNSNKTIRPRIEN
Specific function: Unknown
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI84798622, Length=612, Percent_Identity=25.1633986928105, Blast_Score=133, Evalue=6e-31, Organism=Caenorhabditis elegans, GI17550784, Length=471, Percent_Identity=25.0530785562633, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI24643840, Length=462, Percent_Identity=24.8917748917749, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24643838, Length=462, Percent_Identity=24.8917748917749, Blast_Score=98, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90774; Mature: 90774
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSAPDRVARGAAQWTLIATPAGAIARPSELGEAGWCAASVPGTVAQALAAARRFDPAHP CCCCHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHCCCCCC YPLGDSDYWYRTTLHGAGPRIVRLNGLATIAEVWLDDTLLLCSDNMYVAHDLPVTLGGAH CCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHCCEEEEEECCEEEEECCCEEECCHH RLALCFRSLDRHLAEHPPRGRARWRTRLVDTPALRGVRATFLGRMPGWFPAIEPVGPWRP HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC IDIVNPAGAPTIVHDTLRATLDGRDGVLDATLEFAAPLSRTARAQLVCGEHAAPLEATGP EEEECCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHCCHHHCCCEEEEECCCCCCCCCCCC RTARATLRIANVTPWWPHTHGEPALYDVGVAIGGATIALAKTGFRTLAVERGADGRGFAL CCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCCCCEEE SVNGTPLFARGACWTSADPVGLHADAPAYRRALVLARDAGCNMIRVGGTMIYEADAFYAL EECCCEEEECCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCEEEECCEEEEECCHHHHH CDELGLLVWQDFMLANFDYPSNDPRFAESLKREAEQFLGRHMARPSIAVLCGGSEIAQQA HHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH AMVGLAPDERRVPATEQWLAELCAAHRPDAAYVSDSPHGGVLPFAPREGVTHYYGVGAYL HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCC RPPEDARRAGVRFASECLAFANVPCDATLASIGSPAAHEPAWKRAVPRDPGAPWDFDDVR CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHH DHYLRALYGVEPARLRSIDPARYLTLSRAVVADLVGETLAEWRRVGSSCAGALVWQFQDV HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MPGAGWGLVDAHGRPKSAWHALRRVSQPRQILLTDEGLNGLDVHVLNDAPAPLEARIELV CCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEE ALRDGKTPIARAARTVHVAAHAGQCVNSADLLGRFFDFTYAYRFGPREHDVVIASLYASD EEECCCCHHHHHHHEEEEEHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCC GALLSQAFHFPERTAPTVFERGDIGLEASAAYRDGRWCVQVQTRTFARYVHVCAPGLLPD CHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCC IDWFHLAPGAAARIEFAADPHSPAPDHRPPEADAAHCAPPAIEVRALNSNKTIRPRIEN CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCC >Mature Secondary Structure MKSAPDRVARGAAQWTLIATPAGAIARPSELGEAGWCAASVPGTVAQALAAARRFDPAHP CCCCHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHCCCCCC YPLGDSDYWYRTTLHGAGPRIVRLNGLATIAEVWLDDTLLLCSDNMYVAHDLPVTLGGAH CCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHCCEEEEEECCEEEEECCCEEECCHH RLALCFRSLDRHLAEHPPRGRARWRTRLVDTPALRGVRATFLGRMPGWFPAIEPVGPWRP HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC IDIVNPAGAPTIVHDTLRATLDGRDGVLDATLEFAAPLSRTARAQLVCGEHAAPLEATGP EEEECCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHCCHHHCCCEEEEECCCCCCCCCCCC RTARATLRIANVTPWWPHTHGEPALYDVGVAIGGATIALAKTGFRTLAVERGADGRGFAL CCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECCCCCCCEEE SVNGTPLFARGACWTSADPVGLHADAPAYRRALVLARDAGCNMIRVGGTMIYEADAFYAL EECCCEEEECCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCEEEECCEEEEECCHHHHH CDELGLLVWQDFMLANFDYPSNDPRFAESLKREAEQFLGRHMARPSIAVLCGGSEIAQQA HHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH AMVGLAPDERRVPATEQWLAELCAAHRPDAAYVSDSPHGGVLPFAPREGVTHYYGVGAYL HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCC RPPEDARRAGVRFASECLAFANVPCDATLASIGSPAAHEPAWKRAVPRDPGAPWDFDDVR CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHH DHYLRALYGVEPARLRSIDPARYLTLSRAVVADLVGETLAEWRRVGSSCAGALVWQFQDV HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MPGAGWGLVDAHGRPKSAWHALRRVSQPRQILLTDEGLNGLDVHVLNDAPAPLEARIELV CCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEE ALRDGKTPIARAARTVHVAAHAGQCVNSADLLGRFFDFTYAYRFGPREHDVVIASLYASD EEECCCCHHHHHHHEEEEEHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCC GALLSQAFHFPERTAPTVFERGDIGLEASAAYRDGRWCVQVQTRTFARYVHVCAPGLLPD CHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCC IDWFHLAPGAAARIEFAADPHSPAPDHRPPEADAAHCAPPAIEVRALNSNKTIRPRIEN CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA