Click here to switch to the map view.

The map label for this gene is yifB [H]

Identifier: 53718071

GI number: 53718071

Start: 471119

End: 472705

Strand: Reverse

Name: yifB [H]

Synonym: BPSL0432

Alternate gene names: 53718071

Gene position: 472705-471119 (Counterclockwise)

Preceding gene: 53718072

Following gene: 53718069

Centisome position: 11.6

GC content: 75.05

Gene sequence:

>1587_bases
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGTGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGGCTGCCGTCGTTCTCGATCGTCGGGCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGGTTCGAGTTTCCCGTGCGGCGCATCACCGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGCCAGCTTCCGGCCGGCGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGCTCACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCACGGCGCGCGGCCAGC
AGGCGGACGACGACGGCTCGCCCGCGCAAGCCGAATCGCCGCCCGCGCGGGCGACGGTGCCGAACGCCGCCGAGCTCTAC
CTGCCGCTGCCGAGCGCGGCCGAGGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGATCTGCCCGCGCTGTG
CGCGCACCTCGCCGACACGCCGGACGGGCGGCTCGCCCCCGTCGCCGCGCCCCGGCTCGACGCGCTCCCCGCCGCAGCGA
CGGCCGATCTCGCCGATGTGATCGGCCAGGCGGGCGCGAAGCGCGCGCTCGAAGTCGCCGCCGCGGGCGGCCACCACATG
CTGATGATCGGGCCGCCGGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGCCCTCTTGCCGCCGCTCACCGATGA
CGAGGCACTGACGTCGGCCGCGATCCTGTCGTCGAGCCGCGCGGGCTTCTCGCCCGCTCAATGGCGGCGGCGCCCGTTTC
GCGCGCCGCATCACTCGTCGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCA
CACCTGGGCGTGCTGTTCCTCGACGAGCTGCCGGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAGGC
CGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCGGATTTTCCGGCCGCGTGCCAACTGATCGCCGCGATGAATCCGT
GCCCGTGCGGCTGGCGCGGCGACCCGGGCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTG
TCCGGGCCGCTCCTCGACCGGATCGACATCCAGATCGAGATTCCCGCGCTCACGCCCGCCGAGCTGGCCGAGCGGCCGGC
GGCCGCCGGCGAATCGAGCGAAACCGTGGCCGCGCGCGTCGCGCTCGCGCGCGAGCGGCAATTCGCGAGGCAGCGCAAGA
CCAACCACATGCTGACGGGCCGCGAGACCGATACGCTCTGCCGCCCGGACAGCGCGGGCGAGACGCTGCTGCGCGACGCG
GGCGAGCGGTTCCGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTCGCGCGGACGATCGCGGACCTCGCGGGCGA
CGACGCGCCGAGCGCCGCGCATATCGCCGAGGCGATCCGGTATCGACGGGCGTTCGCGCCGGCGTGA

Upstream 100 bases:

>100_bases
GCAGCTCGCGCCACGCCGGCCAAGCGCGCATCGAAACCATTCTCCGGACGCCGGGCGGCGCGAATCGCGCCGCCCGGCCC
GGTTCACGCGGAGTCGAATC

Downstream 100 bases:

>100_bases
GAAGGAACCGGTTCAGGCATCCGGCGTCGGGGGGAGGAGCCGAGGAAGCAGAAGGGAGATCGCCTTTCCCGACAGGCGGC
GGCGCCGCGGGCGATACCGC

Product: putative magnesium chelatase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 527

Protein sequence:

>528_residues
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATVPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA

Sequences:

>Translated_528_residues
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATVPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA
>Mature_527_residues
SLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGRF
DLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATVPNAAELYL
PLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHML
MIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLAH
LGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKLS
GPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDAG
ERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=522, Percent_Identity=47.3180076628352, Blast_Score=448, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 55467; Mature: 55336

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50051 MCM_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEF
CCCEEEECCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCC
PVRRITVNLAPADLPKESGRFDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMR
CEEEEEEEECCCCCCCCCCCCCCHHHHEEHHCCCCCCCCCCCCHHHHCCEEEHHCCCHHH
GAFAMACGTARGQQADDDGSPAQAESPPARATVPNAAELYLPLPSAAEAALVPGVTVYGA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCEEEECC
ADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
CCHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEE
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSS
EEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCC
SSAALVGGRNPPQPGEITLAHLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQAD
CCEEEECCCCCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEHHHHHCC
FPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKLSGPLLDRIDIQIEIPALTPA
CHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCEEEEEEEEECCCCHH
ELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEF
CCEEEECCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCC
PVRRITVNLAPADLPKESGRFDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMR
CEEEEEEEECCCCCCCCCCCCCCHHHHEEHHCCCCCCCCCCCCHHHHCCEEEHHCCCHHH
GAFAMACGTARGQQADDDGSPAQAESPPARATVPNAAELYLPLPSAAEAALVPGVTVYGA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCEEEECC
ADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
CCHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEE
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSS
EEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCC
SSAALVGGRNPPQPGEITLAHLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQAD
CCEEEECCCCCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEHHHHHCC
FPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKLSGPLLDRIDIQIEIPALTPA
CHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCEEEEEEEEECCCCHH
ELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]