| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is fliF [H]
Identifier: 53717872
GI number: 53717872
Start: 240547
End: 242343
Strand: Reverse
Name: fliF [H]
Synonym: BPSL0230
Alternate gene names: 53717872
Gene position: 242343-240547 (Counterclockwise)
Preceding gene: 53717879
Following gene: 53717871
Centisome position: 5.95
GC content: 69.84
Gene sequence:
>1797_bases ATGGACTCGCAGGCCAACTCGCTGATCAACCCCGACGCCCGTTCGAGCCTTGCGGGCGCATCGCCGCAAGCCGCGGCCGC GGCGGGCGCGCTGCCGGGCGCGGCGGCGGGCGGCGCGGATTTCGGCCTGGGCGGCTTCGCCGAACGCATCCCGGGCCTCT CGCGAATGAAGACGAACCCGCGGCTGCCGTTCCTGATCGGCGCGGCGCTCGCCATCGCCGCGATCGTCGCGCTCGTGCTC TGGAGCCGCGCGCCCGACTACCGCGTGCTGTACAGCAACCTGTCCGACCGCGACGGCGGCGCGATCATCGCCGCGCTCCA GCAGGCAAACGTTCCCTATAAGTTCGCCGACGCGGGCGGCGCGATCCTCGTGCCCGCGAACCAGGTGCACGAGACGCGCC TGAAGCTCGCCGCGATGGGGCTGCCCAAGGGCGGCTCGGTCGGCTTCGAGCTGATGGACAACCAGAAATTCGGCATCAGC CAGTTCGCCGAGCAGGTCAACTACCAGCGCGCGCTCGAGGGCGAGCTGCAGCGCACCGTCGAATCGATCAACGCGGTGCG CGCCGCGCGCGTGCATCTGGCGATTCCGAAGCCTTCGGTATTCGTGCGCGATCGCGAGGCGCCGTCGGCGTCGGTGCTCG TCGATCTGTACCCGGGCCGCGTGCTCGACGAAGGGCAGGTGCTCGCCGTCACGCGCATGGTGTCGTCGAGCGTGCCCGAC ATGCCCGCGAAGAACGTGACGATCGTCGACCAGGACGGCAACCTGCTCACGCAGACCGCGTCCGCCACCGGCCTCGACGC GAGCCAGCTCAAGTACGTGCAGCAGATCGAGCGCAACACGCAAAAGCGCATCGACGCGATCCTCGCGCCGATCTTCGGCG CCGGCAACGCGCGCTCGCAGGTGAGCGCCGACGTCGACTTCTCGAAGATCGAGCAGACCTCGGAGAGCTACGGCCCGAAC GGCACGCCGCAGCAGAGCGCGATCCGCAGCCAGCAGACGAGCAGTTCGACCGAGCTCGCGCAAAGCGGCGCGTCGGGCGT GCCGGGCGCGCTGTCGAACACGCCGCCGCAGCCCGCGTCCGCGCCGATCGTCGCGAGCAACGGCCAGCCGGCCGGCCCGG CCGCGACGCCCGTCAGCGACCGCAAGGATTCGACGACGAACTACGAGCTCGACAAGACCGTGCGGCACGTCGAGCAATCG ATGGGCACGATCAAGCGGCTGTCGGTCGCGGTGGTCGTCAACTATCAGCCGAGCACCGACGCGAAGGGCCGCGTGACGAT GCAGCCGCTCGCCGCGGACAAGCTCGCGCAGGTCCAGCAGCTCGTGAAAGACGCGATGGGCTACGACGAGAAGCGCGGCG ATTCGGTCAACGTCGTCAACAGCGCGTTCTCGGCCGCGGCCGATCCGTTCGCGAACCTGCCGTGGTGGCGCCAGCCGGAC ATGATCGAACTCGGCAAGGACATCGCGAAATGGCTGGGCGTCGCCGCGGCGGCCGCCGCGCTGTACTTCATGTTCGTGCG CCCGGCGCTGCGCCGCGCGTTCCCGCCGCCCGCGGAGCCCGCGGCGGCCGCCGTGCCGGCGCTCGACGGCCCGGACGACA TGCTCGCGCTCGACGGCCTGCCGAGCCCCGACAAGAAGCAGCTTGCCGAGGAGGACGAAGAGCATCCGGCGCTCCTCGCC TTCGAAAACGAGAGGAACCGCTACGAACGCAATCTCGACTACGCGCGCACGATCGCGCGCCAGGATCCGAAGATCGTCGC AACCGTCGTGAAGAACTGGGTGTCCGATGAACGCTGA
Upstream 100 bases:
>100_bases CGCCCGATCGGGCTTGACCGCGCTGCGGATAATCGCACCGTGTCAATGTCCGCCTGCTCTGCCGAGCCGGCATTCAGCCC GCAGTGGAGATACTCGACGC
Downstream 100 bases:
>100_bases AGGCTTGAACAAGAGCGCGCTCCTGCTGATGTCGATCGGCGAGGAAGAGGCCGCGCAGGTATTCAAATTCCTCGCGCCGC GCGAAGTGCAGAAGATCGGC
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 598; Mature: 598
Protein sequence:
>598_residues MDSQANSLINPDARSSLAGASPQAAAAAGALPGAAAGGADFGLGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVL WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPD MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPN GTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLA FENERNRYERNLDYARTIARQDPKIVATVVKNWVSDER
Sequences:
>Translated_598_residues MDSQANSLINPDARSSLAGASPQAAAAAGALPGAAAGGADFGLGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVL WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPD MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPN GTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLA FENERNRYERNLDYARTIARQDPKIVATVVKNWVSDER >Mature_598_residues MDSQANSLINPDARSSLAGASPQAAAAAGALPGAAAGGADFGLGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVL WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPD MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPN GTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLA FENERNRYERNLDYARTIARQDPKIVATVVKNWVSDER
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=558, Percent_Identity=45.6989247311828, Blast_Score=473, Evalue=1e-134,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 63433; Mature: 63433
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSQANSLINPDARSSLAGASPQAAAAAGALPGAAAGGADFGLGGFAERIPGLSRMKTNP CCCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCC RLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGG CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEHHHCCCCEEEECCCC AILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRALEGELQRTV EEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPD HHHHHHHHHEEEEECCCCCEEEECCCCCCCEEEEEECCCCEECCCCEEHHHHHHHCCCCC MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQ CCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPAS CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCC APIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTD CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCC AKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD CCCEEEECCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAAVPALDGPDDMLALDGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEECCC PSPDKKQLAEEDEEHPALLAFENERNRYERNLDYARTIARQDPKIVATVVKNWVSDER CCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MDSQANSLINPDARSSLAGASPQAAAAAGALPGAAAGGADFGLGGFAERIPGLSRMKTNP CCCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCC RLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGG CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEHHHCCCCEEEECCCC AILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRALEGELQRTV EEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPD HHHHHHHHHEEEEECCCCCEEEECCCCCCCEEEEEECCCCEECCCCEEHHHHHHHCCCCC MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQ CCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPAS CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCC APIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTD CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCC AKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD CCCEEEECCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAAVPALDGPDDMLALDGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEECCC PSPDKKQLAEEDEEHPALLAFENERNRYERNLDYARTIARQDPKIVATVVKNWVSDER CCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2544561; 11677609; 1551848 [H]