Click here to switch to the map view.

The map label for this gene is dapF [H]

Identifier: 53717852

GI number: 53717852

Start: 218391

End: 219260

Strand: Reverse

Name: dapF [H]

Synonym: BPSL0210

Alternate gene names: 53717852

Gene position: 219260-218391 (Counterclockwise)

Preceding gene: 53717853

Following gene: 53717851

Centisome position: 5.38

GC content: 70.57

Gene sequence:

>870_bases
ATGAAACTCTCGTTCACCAAGATGCACGGCGCGGGCAACGACTTCGTCGTGCTCGACGGCTACACCCGCGCGCTGCCCCC
GCTCACCGGCGCGCAGGTGCGCGCGCTCGCCGACCGCCACTTCGGGATCGGCGCCGATCAGTTGCTGCTCGTCGAAAAGC
CGACCGTCGACGGCGCCGATTTCAAATACCGGATCTTCAACTGCGACGGCGGCGAAGTCGAGCACTGCGGCAACGGCGCG
CGCTGCTTCGTCAAGTTCGTCCGCGACCACGGGCTCACCGGCAAGGCGAGCGTGCGCGTCGAGGTGAAGCACGGCGTGAT
CACGCTGACGATGCAGGACAACGGCGAGGTCGTCGTCGACATGGGCGCGCCCGTGTTCGAGCCGGCGCGCGTGCCGTTCG
ACGCGAGCGGCCTCGACGGCCGCCGCGAGGGCGCCGACACGCTCTGGCCGCTGCCCGTGAACGGCGTGACGCGCTGGATC
TCGGTCGTGTCGATGGGCAATCCGCACGCGGTGCAGATCGTCGACGACGCCGAGGCGTTCGCGGTGCGCGTCGACGGGCC
GGCGATCGAGTGCGATCCGCGTTTCCCGCAGCGCGTGAACGCGGGCTTCATGCAGATCGTGTCGCGTCACGAAGTGAACC
TGCGCGTCTACGAGCGCGGCGCGGGCGAAACGCTCGCGTGCGGCACGGGCGCGTGCGCGGCCGTCGCGGCCGGCATCCGG
CGCGGGCGACTCGATTCGCCCGTCACGGTCCATACGCACGGCGGCACGCTGACGATCTCGTGGAACGGCGCGTGCGACGA
GCGCGCGCCGCTCATGATGGCCGGCCCCGCGACCACCGTCTTCGAAGGCGTGATCGAGCTGCCCGCCTGA

Upstream 100 bases:

>100_bases
TACTACTGGGTGCACAAGCGCTTCAAGACGCGCCCGCCCGGCGAGCCGAGCGTCTACTGACTCCGCCGCCGCGGCATGCC
CGCGGCATACAATAGCGCCC

Downstream 100 bases:

>100_bases
CCTTTAATAGCCAGACCTTTCATTTGCCGAAGCCCGAACGAAGCGCCATGAACGATCGCGAAGTCGCCGACTACCTGCTC
GCCAACCCCGAATTCTTCGC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGA
RCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWI
SVVSMGNPHAVQIVDDAEAFAVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIR
RGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA

Sequences:

>Translated_289_residues
MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGA
RCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWI
SVVSMGNPHAVQIVDDAEAFAVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIR
RGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA
>Mature_289_residues
MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGA
RCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWI
SVVSMGNPHAVQIVDDAEAFAVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIR
RGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=285, Percent_Identity=50.5263157894737, Blast_Score=266, Evalue=9e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30847; Mature: 30847

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD
CCEEEEEECCCCCCEEEECCCHHHCCCCCCHHHHEEHHHCCCCCCCEEEEEECCCCCCCC
FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD
EEEEEEECCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEECCCCEEEE
MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEECCCEE
AVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIR
EEEECCCEEEECCCCCHHHCHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHHHHHHHHH
RGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA
CCCCCCCEEEEECCCEEEEEECCCCCCCCCEEEECCHHHHHHHHEECCC
>Mature Secondary Structure
MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD
CCEEEEEECCCCCCEEEECCCHHHCCCCCCHHHHEEHHHCCCCCCCEEEEEECCCCCCCC
FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD
EEEEEEECCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEECCCCEEEE
MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEECCCEE
AVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIR
EEEECCCEEEECCCCCHHHCHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHHHHHHHHH
RGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA
CCCCCCCEEEEECCCEEEEEECCCCCCCCCEEEECCHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA