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The map label for this gene is yvoA [H]

Identifier: 52788022

GI number: 52788022

Start: 4195830

End: 4196561

Strand: Direct

Name: yvoA [H]

Synonym: BLi04350

Alternate gene names: 52788022

Gene position: 4195830-4196561 (Clockwise)

Preceding gene: 52788021

Following gene: 52788023

Centisome position: 99.36

GC content: 50.0

Gene sequence:

>732_bases
TTGATCAAAAAAGATTCCCACATTCCGATTTACTATCAGATTGAGACCGAAATTAAAAAGCTTGCCGAAACAAAAGATTT
GAAACCCGGCGACCTCATTCCTTCTGAAAGAGAGTTCGCAGAAAAATATGAGGTGAGCAGGATGACCGTTCGACAGGCGG
TTAACAATCTCGTCAATGAAGGCATTCTCGTCCGGCAGCGGGGAAAAGGGACATTTATTGCCGAGCCAAAAATTGAGCAG
CCTCTCAAAGGATTGACAAGCTTTTCCGAGGACATGAAATCAAGGGGCATGAGGCCCGGCACGAAAATGCTCGGCTTCGG
CGTCATCCCGTGCGACCAGAGCACAGCGCGCAAACTGGAGATACGTGAAGGGGCTTCCGTCTATGAAGTCAAACGGATCC
GCCTCGCCGATGACATCCCGATGGCTTATGAAATCTCCTATTTGCCCGCCGACTTCATTAACGGCCTGACCGAAGACATT
ATGAGCGCATCTTTGTACGACTATGTCGAAAATACGCTCTCCCTTACGATCGACCGGGCCGCGCAAACACTAGAACCGGC
GATTGCCTCTCAGGCAGAGAGCGAGCCTCTCGACATAGAGGAAGGCGCACCAGTCCTGCTCATTGAACGCTTGAGCTATT
TGGACGACGGCAGACCGTTTGAAGTGGTCAAATCCGTTTACAGAGGCGACCGCTATAAATTCGTCATTGATATGAAGAGG
AAAGACCAATGA

Upstream 100 bases:

>100_bases
ATGAAGACACCCCCGCTTCCGTCTTAAAAACGCACCAAGACGTCGTCATCATAGCGGACAGCGATGCTTTATCAATCGTG
AAAGAAAGGGGTATGGCCTT

Downstream 100 bases:

>100_bases
GGAAGACAGAGAATACGAACGACAAAAGCACAGCACTTGATGAAATGAATGCTTTAGATATCGTCACCTTGATGAATGAG
GAGGATCACACAGTCCCTCG

Product: YvoA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIKKDSHIPIYYQIETEIKKLAETKDLKPGDLIPSEREFAEKYEVSRMTVRQAVNNLVNEGILVRQRGKGTFIAEPKIEQ
PLKGLTSFSEDMKSRGMRPGTKMLGFGVIPCDQSTARKLEIREGASVYEVKRIRLADDIPMAYEISYLPADFINGLTEDI
MSASLYDYVENTLSLTIDRAAQTLEPAIASQAESEPLDIEEGAPVLLIERLSYLDDGRPFEVVKSVYRGDRYKFVIDMKR
KDQ

Sequences:

>Translated_243_residues
MIKKDSHIPIYYQIETEIKKLAETKDLKPGDLIPSEREFAEKYEVSRMTVRQAVNNLVNEGILVRQRGKGTFIAEPKIEQ
PLKGLTSFSEDMKSRGMRPGTKMLGFGVIPCDQSTARKLEIREGASVYEVKRIRLADDIPMAYEISYLPADFINGLTEDI
MSASLYDYVENTLSLTIDRAAQTLEPAIASQAESEPLDIEEGAPVLLIERLSYLDDGRPFEVVKSVYRGDRYKFVIDMKR
KDQ
>Mature_243_residues
MIKKDSHIPIYYQIETEIKKLAETKDLKPGDLIPSEREFAEKYEVSRMTVRQAVNNLVNEGILVRQRGKGTFIAEPKIEQ
PLKGLTSFSEDMKSRGMRPGTKMLGFGVIPCDQSTARKLEIREGASVYEVKRIRLADDIPMAYEISYLPADFINGLTEDI
MSASLYDYVENTLSLTIDRAAQTLEPAIASQAESEPLDIEEGAPVLLIERLSYLDDGRPFEVVKSVYRGDRYKFVIDMKR
KDQ

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=235, Percent_Identity=34.8936170212766, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1790118, Length=208, Percent_Identity=28.3653846153846, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788418, Length=229, Percent_Identity=30.1310043668122, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082252, Length=218, Percent_Identity=27.0642201834862, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1790540, Length=235, Percent_Identity=24.2553191489362, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27591; Mature: 27591

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKDSHIPIYYQIETEIKKLAETKDLKPGDLIPSEREFAEKYEVSRMTVRQAVNNLVNE
CCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GILVRQRGKGTFIAEPKIEQPLKGLTSFSEDMKSRGMRPGTKMLGFGVIPCDQSTARKLE
CEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHH
IREGASVYEVKRIRLADDIPMAYEISYLPADFINGLTEDIMSASLYDYVENTLSLTIDRA
HHCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQTLEPAIASQAESEPLDIEEGAPVLLIERLSYLDDGRPFEVVKSVYRGDRYKFVIDMKR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECC
KDQ
CCC
>Mature Secondary Structure
MIKKDSHIPIYYQIETEIKKLAETKDLKPGDLIPSEREFAEKYEVSRMTVRQAVNNLVNE
CCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GILVRQRGKGTFIAEPKIEQPLKGLTSFSEDMKSRGMRPGTKMLGFGVIPCDQSTARKLE
CEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHH
IREGASVYEVKRIRLADDIPMAYEISYLPADFINGLTEDIMSASLYDYVENTLSLTIDRA
HHCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQTLEPAIASQAESEPLDIEEGAPVLLIERLSYLDDGRPFEVVKSVYRGDRYKFVIDMKR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECC
KDQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]