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The map label for this gene is ykcB [H]

Identifier: 52787865

GI number: 52787865

Start: 4015809

End: 4018043

Strand: Direct

Name: ykcB [H]

Synonym: BLi04188

Alternate gene names: 52787865

Gene position: 4015809-4018043 (Clockwise)

Preceding gene: 52787864

Following gene: 52787866

Centisome position: 95.1

GC content: 50.11

Gene sequence:

>2235_bases
ATGATTAAGAAAAGGAAAATCGATATATTCCTGGTCTTCATTCTTGTATTATCTGCAGCATTAAACTTGTACGGCATCTG
GAATAGTGACACAGACAACGCCTACTATACGGCGGCCGTTGAAAGTATGACCCAAAGCTTTCATAACTTCTTTTACGCAT
CATTTGATCCGGCAGGCTTTGTAACAGTTGATAAACCGCCTGTCGCACTCTGGATTCAGACACTTTTTGCACTTGTATTC
GGCGTGCACGGCTGGAGCGTCGTTCTCCCTGAAGCCATTGCGGAAGTGATTTCCGTAGCACTCTTGTACTTTATTGTAAA
ACCTACTTTTGGCAAAACGGCGGCCAGAATTTCAGCTCTTATTATGGCGTGTACGCCGATTGCCGTTGCGGTCAGCCATA
CAAACAACGTCGACAGCATTCTCGTCCTTTGCTTGATGATTGCAACGTGGCTGTTGTTTAAAGCAGTCCGGAAAGGAAAA
ATCGGCTGGCTGCTCGGCGCATTCTGTATGATCGGTGTCGGTTTTAACGTCAAAATGCTGCAAGCTTACATGGTATTACC
GGCATTCCTGCTGTTTTACATGATTGGAGCCAAAACGACGATTCGCAAAAAAGTTGTGTCTCTTATCACAGCCGTGATCG
TTCTGGCAGGTGTTTCCGTTTCCTGGGCGGTTGTCGTCGACAGCCAGCCCGAGATTTCGCGCCCTTATATCGGAAGCAGC
CAGACCAACTCTGTCCTTGAGCTGGCGTTTGGCTATAACGGCATCCAGCGTCTCACAGGTCAAAACGGTGCAGGCGGGGG
CGGAACCTCCTCATCTGATCATGATCAAAAGAATCAGCAGCAAAGCGGCGATATTGAAAACAACTCAGACTCGGCAAATG
GACAAATGGCTCCGCCGAGCGGAGGCGAAATGCCTTCGGGCGGACCGGATGGCCGGCAGGGTGATGTCCAAAGCGGCGGC
GGAGGTCCCGGTGGCGGCACAGGCGGCATGTTTGGCACTGGAACCCCGGGTCCTCTCAGACTATTCCAATCTGAGCTTTC
AGGACAGGCTAGCTGGCTGATCCCGTTTGTCCTCTTCGGCATCATCGGTTTGCTGATCGCGGGTCTTCGCAGACAAAGAA
AATTCAATGAAACAACGACTGAAACAATTTTCTGGATGATGTGGCTTCTGCCGGTCGCTGCATTCTTCAGCATCGCAGGA
TTCTTCCATCATTACTATCTGATTATGCTGGCAGCTCCAATCGCCGCTTTGTCAGGTGCAGGCTGGACGGCGCTCGTTCG
CCTCTATCAGGAAGAAAGCGGCTGGAAAAAACGGCTGCTGCCAATCGGCATTTTGCTGACAACCGCATTTGAATTGTATA
TTTTGAGTCCTTATCTCAGCGAAATCGGCTTCATCTGGAGCATATTGATCGGCGCTTTCGGCATTGTCACAAGCTGTCTT
CTCATCTTTCTCAAGAAAGGAAAGTCATTCAGCTACTATGTATCACTTGCAGCGCTGCTTGGCATGCTGATCGGGCCTTT
CTATTGGACAACGGCGACGCTTGCTGACGGTGTAAACGGCATGATTCCACAGGCCGGACCTAAATCCGCACAATCATTTG
CCGGCGGTGGCGGAGGAGGTAAGATGCAGAATAACGACGGCAGCGGACCTCCCGGATTTGGCAGCCAAGACGGCCAAACA
GACAGTAATCAAAACAACAATAATGGCCCTGGCTTCGGTCCAGGTTCAAACAGCCAAAACAGCAACGATTCTTCAGCTGA
TACCGGTTCCGGCCAAAACAGCCAAAATCAGAATGACGAAGGCGCAAGCGGCCGTCAACAAGGCAGACCAAGCGGCGGCG
GCAGCCCTGGAAGCGGCGAGTCGGTCGATGAAGAACTGTTGAGCTACCTTGAAAAGAACAACACCGGTGAAAAATATTTA
TTTGCAGTCTCAAGTGCAACTTCTGCTCAATCTTACATCATCAAAACGGGCAAAGCTGTGATGGCGATGGGCGGATTCTC
AGGAAGCGACCCGATTTTGACGGTTGAAAAACTTGAGAAGCTCGTCAAAAACGGCGAAGTCAAGTACTTCATGATCGGCG
ACGGCCGAGGCCGGGACAATTCAGAAATCACCAACTGGATTAAAGAAAACGGCACAGAAATTTCAAAAAGCGAATACAGC
AGCTCTTCTTCTGATGATTCACAGTCAGGCGGACCTGGCGGAAATCAAACGCTTTATAAAGTGGAGCTGGATTGA

Upstream 100 bases:

>100_bases
CTTTTTTTGCCCCTCTATACAATTTAAAATTCCTTCTTGATTTGTTCATAGTTTGATCATATTTGGCTTCTATAATGCTC
TTTAGTGAGGTGATCGAACA

Downstream 100 bases:

>100_bases
TGAAAGGAAAGGTGATGAATATGCAGAAACAAGTCACATTTTCAATCGTAGTACCTGTCTACAACGAAGCGGAAGTGCTT
CAAAGCACCTATGACCGATT

Product: YkcB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MIKKRKIDIFLVFILVLSAALNLYGIWNSDTDNAYYTAAVESMTQSFHNFFYASFDPAGFVTVDKPPVALWIQTLFALVF
GVHGWSVVLPEAIAEVISVALLYFIVKPTFGKTAARISALIMACTPIAVAVSHTNNVDSILVLCLMIATWLLFKAVRKGK
IGWLLGAFCMIGVGFNVKMLQAYMVLPAFLLFYMIGAKTTIRKKVVSLITAVIVLAGVSVSWAVVVDSQPEISRPYIGSS
QTNSVLELAFGYNGIQRLTGQNGAGGGGTSSSDHDQKNQQQSGDIENNSDSANGQMAPPSGGEMPSGGPDGRQGDVQSGG
GGPGGGTGGMFGTGTPGPLRLFQSELSGQASWLIPFVLFGIIGLLIAGLRRQRKFNETTTETIFWMMWLLPVAAFFSIAG
FFHHYYLIMLAAPIAALSGAGWTALVRLYQEESGWKKRLLPIGILLTTAFELYILSPYLSEIGFIWSILIGAFGIVTSCL
LIFLKKGKSFSYYVSLAALLGMLIGPFYWTTATLADGVNGMIPQAGPKSAQSFAGGGGGGKMQNNDGSGPPGFGSQDGQT
DSNQNNNNGPGFGPGSNSQNSNDSSADTGSGQNSQNQNDEGASGRQQGRPSGGGSPGSGESVDEELLSYLEKNNTGEKYL
FAVSSATSAQSYIIKTGKAVMAMGGFSGSDPILTVEKLEKLVKNGEVKYFMIGDGRGRDNSEITNWIKENGTEISKSEYS
SSSSDDSQSGGPGGNQTLYKVELD

Sequences:

>Translated_744_residues
MIKKRKIDIFLVFILVLSAALNLYGIWNSDTDNAYYTAAVESMTQSFHNFFYASFDPAGFVTVDKPPVALWIQTLFALVF
GVHGWSVVLPEAIAEVISVALLYFIVKPTFGKTAARISALIMACTPIAVAVSHTNNVDSILVLCLMIATWLLFKAVRKGK
IGWLLGAFCMIGVGFNVKMLQAYMVLPAFLLFYMIGAKTTIRKKVVSLITAVIVLAGVSVSWAVVVDSQPEISRPYIGSS
QTNSVLELAFGYNGIQRLTGQNGAGGGGTSSSDHDQKNQQQSGDIENNSDSANGQMAPPSGGEMPSGGPDGRQGDVQSGG
GGPGGGTGGMFGTGTPGPLRLFQSELSGQASWLIPFVLFGIIGLLIAGLRRQRKFNETTTETIFWMMWLLPVAAFFSIAG
FFHHYYLIMLAAPIAALSGAGWTALVRLYQEESGWKKRLLPIGILLTTAFELYILSPYLSEIGFIWSILIGAFGIVTSCL
LIFLKKGKSFSYYVSLAALLGMLIGPFYWTTATLADGVNGMIPQAGPKSAQSFAGGGGGGKMQNNDGSGPPGFGSQDGQT
DSNQNNNNGPGFGPGSNSQNSNDSSADTGSGQNSQNQNDEGASGRQQGRPSGGGSPGSGESVDEELLSYLEKNNTGEKYL
FAVSSATSAQSYIIKTGKAVMAMGGFSGSDPILTVEKLEKLVKNGEVKYFMIGDGRGRDNSEITNWIKENGTEISKSEYS
SSSSDDSQSGGPGGNQTLYKVELD
>Mature_744_residues
MIKKRKIDIFLVFILVLSAALNLYGIWNSDTDNAYYTAAVESMTQSFHNFFYASFDPAGFVTVDKPPVALWIQTLFALVF
GVHGWSVVLPEAIAEVISVALLYFIVKPTFGKTAARISALIMACTPIAVAVSHTNNVDSILVLCLMIATWLLFKAVRKGK
IGWLLGAFCMIGVGFNVKMLQAYMVLPAFLLFYMIGAKTTIRKKVVSLITAVIVLAGVSVSWAVVVDSQPEISRPYIGSS
QTNSVLELAFGYNGIQRLTGQNGAGGGGTSSSDHDQKNQQQSGDIENNSDSANGQMAPPSGGEMPSGGPDGRQGDVQSGG
GGPGGGTGGMFGTGTPGPLRLFQSELSGQASWLIPFVLFGIIGLLIAGLRRQRKFNETTTETIFWMMWLLPVAAFFSIAG
FFHHYYLIMLAAPIAALSGAGWTALVRLYQEESGWKKRLLPIGILLTTAFELYILSPYLSEIGFIWSILIGAFGIVTSCL
LIFLKKGKSFSYYVSLAALLGMLIGPFYWTTATLADGVNGMIPQAGPKSAQSFAGGGGGGKMQNNDGSGPPGFGSQDGQT
DSNQNNNNGPGFGPGSNSQNSNDSSADTGSGQNSQNQNDEGASGRQQGRPSGGGSPGSGESVDEELLSYLEKNNTGEKYL
FAVSSATSAQSYIIKTGKAVMAMGGFSGSDPILTVEKLEKLVKNGEVKYFMIGDGRGRDNSEITNWIKENGTEISKSEYS
SSSSDDSQSGGPGGNQTLYKVELD

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 39 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003342 [H]

Pfam domain/function: PF02366 PMT [H]

EC number: NA

Molecular weight: Translated: 78944; Mature: 78944

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKRKIDIFLVFILVLSAALNLYGIWNSDTDNAYYTAAVESMTQSFHNFFYASFDPAGF
CCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHHHHHHHEEEECCCCCE
VTVDKPPVALWIQTLFALVFGVHGWSVVLPEAIAEVISVALLYFIVKPTFGKTAARISAL
EEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IMACTPIAVAVSHTNNVDSILVLCLMIATWLLFKAVRKGKIGWLLGAFCMIGVGFNVKML
HHHHCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH
QAYMVLPAFLLFYMIGAKTTIRKKVVSLITAVIVLAGVSVSWAVVVDSQPEISRPYIGSS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
QTNSVLELAFGYNGIQRLTGQNGAGGGGTSSSDHDQKNQQQSGDIENNSDSANGQMAPPS
CCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
GGEMPSGGPDGRQGDVQSGGGGPGGGTGGMFGTGTPGPLRLFQSELSGQASWLIPFVLFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
IIGLLIAGLRRQRKFNETTTETIFWMMWLLPVAAFFSIAGFFHHYYLIMLAAPIAALSGA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GWTALVRLYQEESGWKKRLLPIGILLTTAFELYILSPYLSEIGFIWSILIGAFGIVTSCL
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIFLKKGKSFSYYVSLAALLGMLIGPFYWTTATLADGVNGMIPQAGPKSAQSFAGGGGGG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC
KMQNNDGSGPPGFGSQDGQTDSNQNNNNGPGFGPGSNSQNSNDSSADTGSGQNSQNQNDE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GASGRQQGRPSGGGSPGSGESVDEELLSYLEKNNTGEKYLFAVSSATSAQSYIIKTGKAV
CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCEE
MAMGGFSGSDPILTVEKLEKLVKNGEVKYFMIGDGRGRDNSEITNWIKENGTEISKSEYS
EEECCCCCCCCEEEHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHCC
SSSSDDSQSGGPGGNQTLYKVELD
CCCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MIKKRKIDIFLVFILVLSAALNLYGIWNSDTDNAYYTAAVESMTQSFHNFFYASFDPAGF
CCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHHHHHHHEEEECCCCCE
VTVDKPPVALWIQTLFALVFGVHGWSVVLPEAIAEVISVALLYFIVKPTFGKTAARISAL
EEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IMACTPIAVAVSHTNNVDSILVLCLMIATWLLFKAVRKGKIGWLLGAFCMIGVGFNVKML
HHHHCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH
QAYMVLPAFLLFYMIGAKTTIRKKVVSLITAVIVLAGVSVSWAVVVDSQPEISRPYIGSS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
QTNSVLELAFGYNGIQRLTGQNGAGGGGTSSSDHDQKNQQQSGDIENNSDSANGQMAPPS
CCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
GGEMPSGGPDGRQGDVQSGGGGPGGGTGGMFGTGTPGPLRLFQSELSGQASWLIPFVLFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
IIGLLIAGLRRQRKFNETTTETIFWMMWLLPVAAFFSIAGFFHHYYLIMLAAPIAALSGA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GWTALVRLYQEESGWKKRLLPIGILLTTAFELYILSPYLSEIGFIWSILIGAFGIVTSCL
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIFLKKGKSFSYYVSLAALLGMLIGPFYWTTATLADGVNGMIPQAGPKSAQSFAGGGGGG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC
KMQNNDGSGPPGFGSQDGQTDSNQNNNNGPGFGPGSNSQNSNDSSADTGSGQNSQNQNDE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GASGRQQGRPSGGGSPGSGESVDEELLSYLEKNNTGEKYLFAVSSATSAQSYIIKTGKAV
CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCEE
MAMGGFSGSDPILTVEKLEKLVKNGEVKYFMIGDGRGRDNSEITNWIKENGTEISKSEYS
EEECCCCCCCCEEEHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHCC
SSSSDDSQSGGPGGNQTLYKVELD
CCCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]