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The map label for this gene is ydfH [H]

Identifier: 52787770

GI number: 52787770

Start: 3917303

End: 3917974

Strand: Direct

Name: ydfH [H]

Synonym: BLi04093

Alternate gene names: 52787770

Gene position: 3917303-3917974 (Clockwise)

Preceding gene: 52787762

Following gene: 52787771

Centisome position: 92.77

GC content: 46.28

Gene sequence:

>672_bases
ATGCACTCTTCAAATCCAGTCAAAAGACAGTCTGCAAGTGATTACGCTTATAACGAATTAAGAACGAAAATCATCGAACT
TGAATATCCTCCCTCTGAACAGCTTGCTGAAGACAGTCTTGCAAAGGGTTTAAACATCAGCAGAACTCCTCTTCGCCAGG
CTCTTTACCGGCTGGAGCTTGAAGGATTGGTCAGTAAACAGCCGAACGGCCGGCTTCGCGTATGCCCGATTTCGCTCGCT
GAAGCGAAAGAGGTTTTTAAAGTGCGTGAAGCGCTTGAAGGACTACTCACTGCCGAAGCCGCACAGCTGGTGACGCCGGA
GAGCCTTCATCAGCTTGAAGACCGCATCGAACTGATGAAGCTGGCTGCCGTAAAGGGCCGCAAAACAGATACGGTCAAAT
ACGGATCAGAATTTCATTCTATCTTGCACGCCATCAGCACAAATGCAACCGCAAAACGTTTTCTGGATCAGCTTGAAAGC
AGGATTGAACGGTATCGCAGAATCAGCGGATACAAAAATCCTGACTACAAACCGTCTGTATCTTTCAATGAACACTTGGA
TATTTTTAATGCCGTCAAAGAAAAAAACAGCGTTTTGGCAGAAGCCGCCATGCGTTCCCACATTAAACGAAGCTTACGTT
CAATTGAAGAAACGCTCGAACGTTCATACTAA

Upstream 100 bases:

>100_bases
TGAGATGATTTATTGGTCTTCAGTGGATGACATTGACATATCTGTATTATTGTATACAATAATAATTATATTCTGAAAAA
AGGAGGCGAAAGCTTTTTTC

Downstream 100 bases:

>100_bases
TCCGCCGAACAGCCAATGCCATTCTCACAGCACGTTTTTGACACAAATGTTAAAAAACGAATAAGAGGTGGAAAAATGGG
CAAACAAGGTGTATTTAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MHSSNPVKRQSASDYAYNELRTKIIELEYPPSEQLAEDSLAKGLNISRTPLRQALYRLELEGLVSKQPNGRLRVCPISLA
EAKEVFKVREALEGLLTAEAAQLVTPESLHQLEDRIELMKLAAVKGRKTDTVKYGSEFHSILHAISTNATAKRFLDQLES
RIERYRRISGYKNPDYKPSVSFNEHLDIFNAVKEKNSVLAEAAMRSHIKRSLRSIEETLERSY

Sequences:

>Translated_223_residues
MHSSNPVKRQSASDYAYNELRTKIIELEYPPSEQLAEDSLAKGLNISRTPLRQALYRLELEGLVSKQPNGRLRVCPISLA
EAKEVFKVREALEGLLTAEAAQLVTPESLHQLEDRIELMKLAAVKGRKTDTVKYGSEFHSILHAISTNATAKRFLDQLES
RIERYRRISGYKNPDYKPSVSFNEHLDIFNAVKEKNSVLAEAAMRSHIKRSLRSIEETLERSY
>Mature_223_residues
MHSSNPVKRQSASDYAYNELRTKIIELEYPPSEQLAEDSLAKGLNISRTPLRQALYRLELEGLVSKQPNGRLRVCPISLA
EAKEVFKVREALEGLLTAEAAQLVTPESLHQLEDRIELMKLAAVKGRKTDTVKYGSEFHSILHAISTNATAKRFLDQLES
RIERYRRISGYKNPDYKPSVSFNEHLDIFNAVKEKNSVLAEAAMRSHIKRSLRSIEETLERSY

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=221, Percent_Identity=27.1493212669683, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25413; Mature: 25413

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSSNPVKRQSASDYAYNELRTKIIELEYPPSEQLAEDSLAKGLNISRTPLRQALYRLEL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EGLVSKQPNGRLRVCPISLAEAKEVFKVREALEGLLTAEAAQLVTPESLHQLEDRIELMK
HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LAAVKGRKTDTVKYGSEFHSILHAISTNATAKRFLDQLESRIERYRRISGYKNPDYKPSV
HHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SFNEHLDIFNAVKEKNSVLAEAAMRSHIKRSLRSIEETLERSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHSSNPVKRQSASDYAYNELRTKIIELEYPPSEQLAEDSLAKGLNISRTPLRQALYRLEL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EGLVSKQPNGRLRVCPISLAEAKEVFKVREALEGLLTAEAAQLVTPESLHQLEDRIELMK
HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LAAVKGRKTDTVKYGSEFHSILHAISTNATAKRFLDQLESRIERYRRISGYKNPDYKPSV
HHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SFNEHLDIFNAVKEKNSVLAEAAMRSHIKRSLRSIEETLERSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]