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The map label for this gene is ywbI1 [H]

Identifier: 52787730

GI number: 52787730

Start: 3878986

End: 3879579

Strand: Reverse

Name: ywbI1 [H]

Synonym: BLi04053

Alternate gene names: 52787730

Gene position: 3879579-3878986 (Counterclockwise)

Preceding gene: 52787731

Following gene: 52787729

Centisome position: 91.88

GC content: 48.32

Gene sequence:

>594_bases
GTGATAGGGGATTTCAGAGATAAGTATCCGAACGTCACCTTTCAGCTTGTTGAACACGGGTCTGTGAAAGTGCAGGAGGG
AGTAGAGGACGGATCGCTTGATATCGGCGTTGTCGTCCTGCCTGCAAAAGAGGAGATTTTTCACTCCTTTACAATTGTTA
AAGAAGACTTAATGCTAATCGTCCACCTGTCCCATCGTTTTGCCGATGCGGAAGAGATCGAGCTTCGGCAGTTAAGCGAA
GAACCGTTTATTTTCTTCCGGGAAGACTTTGTTCTTCACGAACGGATCATTACGGCCTGCTTGAAGGCGGGATTTCAGCC
GAATGTCATTTATGAAACCTCACAATGGGATTTCATCAGCGAAATGGTTTCCGCGAACCTTGGGATAGGTCTTTTGCCCG
AAAGGATCTGCCGGGATCTTGACCCTGAAAGGGTGAGGATCATTCCGCTGGTGAGGCCGGCCATTCCTTGGCATGTCGCC
GTCATTTGGAGAAAAGACCGCTATCTGTCGTTCGCGGCGAGGGCGTGGATTGATCATACAAAATCGTATATATGGAGCGA
GAATTCAAAAACAGAAAGGAATGCAGGCGAATGA

Upstream 100 bases:

>100_bases
TTCAAAATTTAACTTCTGAGCTGAACGACTTGATGGACGTCAAAAAAGGGCATGTGAGGATCGGTCTGCCGCCGATGATC
GGCTCCGGTTTTTTCCGAAA

Downstream 100 bases:

>100_bases
ATATGGAAGATGCCGCAAGGGGAATTGAGTTAGTCAGAAAGCAAAAACCGCTCGTACACAATATGACAAACAATGTCGTC
ACCAACTTTACGGCAAACGG

Product: YwbI1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MIGDFRDKYPNVTFQLVEHGSVKVQEGVEDGSLDIGVVVLPAKEEIFHSFTIVKEDLMLIVHLSHRFADAEEIELRQLSE
EPFIFFREDFVLHERIITACLKAGFQPNVIYETSQWDFISEMVSANLGIGLLPERICRDLDPERVRIIPLVRPAIPWHVA
VIWRKDRYLSFAARAWIDHTKSYIWSENSKTERNAGE

Sequences:

>Translated_197_residues
MIGDFRDKYPNVTFQLVEHGSVKVQEGVEDGSLDIGVVVLPAKEEIFHSFTIVKEDLMLIVHLSHRFADAEEIELRQLSE
EPFIFFREDFVLHERIITACLKAGFQPNVIYETSQWDFISEMVSANLGIGLLPERICRDLDPERVRIIPLVRPAIPWHVA
VIWRKDRYLSFAARAWIDHTKSYIWSENSKTERNAGE
>Mature_197_residues
MIGDFRDKYPNVTFQLVEHGSVKVQEGVEDGSLDIGVVVLPAKEEIFHSFTIVKEDLMLIVHLSHRFADAEEIELRQLSE
EPFIFFREDFVLHERIITACLKAGFQPNVIYETSQWDFISEMVSANLGIGLLPERICRDLDPERVRIIPLVRPAIPWHVA
VIWRKDRYLSFAARAWIDHTKSYIWSENSKTERNAGE

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=26.5536723163842, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787879, Length=177, Percent_Identity=27.683615819209, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 22852; Mature: 22852

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGDFRDKYPNVTFQLVEHGSVKVQEGVEDGSLDIGVVVLPAKEEIFHSFTIVKEDLMLI
CCCCCCHHCCCEEEEEEECCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHEEE
VHLSHRFADAEEIELRQLSEEPFIFFREDFVLHERIITACLKAGFQPNVIYETSQWDFIS
EEHHHHCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHH
EMVSANLGIGLLPERICRDLDPERVRIIPLVRPAIPWHVAVIWRKDRYLSFAARAWIDHT
HHHHCCCCCCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHH
KSYIWSENSKTERNAGE
HHHEECCCCCCCCCCCC
>Mature Secondary Structure
MIGDFRDKYPNVTFQLVEHGSVKVQEGVEDGSLDIGVVVLPAKEEIFHSFTIVKEDLMLI
CCCCCCHHCCCEEEEEEECCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHEEE
VHLSHRFADAEEIELRQLSEEPFIFFREDFVLHERIITACLKAGFQPNVIYETSQWDFIS
EEHHHHCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHH
EMVSANLGIGLLPERICRDLDPERVRIIPLVRPAIPWHVAVIWRKDRYLSFAARAWIDHT
HHHHCCCCCCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHH
KSYIWSENSKTERNAGE
HHHEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]