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The map label for this gene is atpD [H]

Identifier: 52787604

GI number: 52787604

Start: 3752401

End: 3753822

Strand: Reverse

Name: atpD [H]

Synonym: BLi03926

Alternate gene names: 52787604

Gene position: 3753822-3752401 (Counterclockwise)

Preceding gene: 52787605

Following gene: 52787603

Centisome position: 88.9

GC content: 49.51

Gene sequence:

>1422_bases
ATGAAAAAAGGACGCGTTAGCCAGGTATTAGGGCCGGTCGTAGATGTTCGTTTTGAAGACGGTCACTTGCCTGAAATATA
TAATGCGATTAAAGTTACACATAAAGCGCAGAACGAGAATGAAGTGGACATCGATCTTACCCTTGAAGTAGCGCTTCACT
TGGGTGATGATTCAGTTCGTACAATTGCAATGGCTTCAACTGACGGTGTTACACGCGGAATGGAAGCCATCGACCTGGGA
GAGCCGATCTCCGTTCCGGTCGGAAACGTAACACTCGGCCGCGTATTTAATGTACTCGGGGAAAATATCGATTTGGATGA
GCCGCTTCCGGCTGATGCTGCCAAAGATCCGATTCACAGAGAAGCTCCAAAATTTGATCAGCTATCAACAGAGGTTGAAA
TCTTAGAGACGGGTATTAAAGTCGTCGACTTGCTCGCTCCATATATCAAAGGCGGAAAGATCGGTCTTTTCGGAGGAGCG
GGAGTTGGAAAAACCGTTTTGATTCAGGAGCTGATCAACAACATCGCTCAAGAGCACGGCGGTATCTCTGTATTCGCAGG
TGTCGGCGAGCGTACGCGTGAAGGAAACGACCTTTACTATGAAATGAAAGATTCCGGCGTTATCGGCAAAACGGCAATGG
TCTTCGGTCAGATGAACGAGCCGCCTGGTGCGCGGATGCGCGTTGCCTTGACCGGACTTACAATGGCCGAGCATTTCCGT
GATAAAGAAGGCCAGGACGTATTGTTCTTTATCGATAACATCTTCCGATTCACTCAAGCAGGATCTGAAGTATCTGCACT
TCTTGGACGCATGCCGTCAGCGGTTGGTTATCAGCCGACGCTTGCGACCGAAATGGGTCAGCTTCAGGAACGGATCACAT
CAACAAATGTCGGATCTGTAACATCGATTCAGGCGATCTACGTTCCTGCCGATGACTATACTGACCCGGCGCCGGCTACG
ACGTTCGCTCACTTGGATGCGACGACGAACCTTGAGCGTAAGCTGTCGGAAATGGGGATTTATCCTGCGGTCGATCCGCT
TGCATCCACTTCCCGTGCGCTTTCGCCTGAAATCGTCGGAGAAGAGCACTATGAAGTGGCGCGCAGCGTTCAGCAGATCC
TGCAGCGCTACAAAGAGCTTCAGGATATCATCGCGATGCTCGGAATGGATGAGTTGTCAGACGAAGATAAGCTTGTCGTC
AGCCGTGCGCGCCGCGTACAATTCTTCCTGTCGCAAAACTTCCACGTAGCTGAACAGTTTACAGGACAAAAAGGTTCTTA
CGTACCTGTCAAAGAAACGGTAAAAGGCTTCAAAGAAATCCTTGAAGGTAAGTATGATCACCTTCCTGAGGACGCTTTCC
GCCTTGTCGGCCGAATCGAAGAAGTTGTCGAAAAAGCGAAAGAAATGGGTGTAGAAGTATAA

Upstream 100 bases:

>100_bases
TACAACCGTGCCCGTCAGGCATCCATCACGCAGGAAATTACGGAAATTGTCGGCGGTGCAGCTGCTTTAGAATAGAAAAA
GTTTGTCAGGAGGGATAGAG

Downstream 100 bases:

>100_bases
TCTGGTCCTAGGAGGGTAAAAGCATGAAGACCTTAAAAGTCAATATCGTTACTCCCGACGGCCCAGTATACGATGCGGAT
ATAGAAATGGTAAGCGTTAG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MKKGRVSQVLGPVVDVRFEDGHLPEIYNAIKVTHKAQNENEVDIDLTLEVALHLGDDSVRTIAMASTDGVTRGMEAIDLG
EPISVPVGNVTLGRVFNVLGENIDLDEPLPADAAKDPIHREAPKFDQLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGA
GVGKTVLIQELINNIAQEHGGISVFAGVGERTREGNDLYYEMKDSGVIGKTAMVFGQMNEPPGARMRVALTGLTMAEHFR
DKEGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPAT
TFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVGEEHYEVARSVQQILQRYKELQDIIAMLGMDELSDEDKLVV
SRARRVQFFLSQNFHVAEQFTGQKGSYVPVKETVKGFKEILEGKYDHLPEDAFRLVGRIEEVVEKAKEMGVEV

Sequences:

>Translated_473_residues
MKKGRVSQVLGPVVDVRFEDGHLPEIYNAIKVTHKAQNENEVDIDLTLEVALHLGDDSVRTIAMASTDGVTRGMEAIDLG
EPISVPVGNVTLGRVFNVLGENIDLDEPLPADAAKDPIHREAPKFDQLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGA
GVGKTVLIQELINNIAQEHGGISVFAGVGERTREGNDLYYEMKDSGVIGKTAMVFGQMNEPPGARMRVALTGLTMAEHFR
DKEGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPAT
TFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVGEEHYEVARSVQQILQRYKELQDIIAMLGMDELSDEDKLVV
SRARRVQFFLSQNFHVAEQFTGQKGSYVPVKETVKGFKEILEGKYDHLPEDAFRLVGRIEEVVEKAKEMGVEV
>Mature_473_residues
MKKGRVSQVLGPVVDVRFEDGHLPEIYNAIKVTHKAQNENEVDIDLTLEVALHLGDDSVRTIAMASTDGVTRGMEAIDLG
EPISVPVGNVTLGRVFNVLGENIDLDEPLPADAAKDPIHREAPKFDQLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGA
GVGKTVLIQELINNIAQEHGGISVFAGVGERTREGNDLYYEMKDSGVIGKTAMVFGQMNEPPGARMRVALTGLTMAEHFR
DKEGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPAT
TFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVGEEHYEVARSVQQILQRYKELQDIIAMLGMDELSDEDKLVV
SRARRVQFFLSQNFHVAEQFTGQKGSYVPVKETVKGFKEILEGKYDHLPEDAFRLVGRIEEVVEKAKEMGVEV

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=475, Percent_Identity=68.4210526315789, Blast_Score=640, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=322, Percent_Identity=27.3291925465839, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI19913426, Length=346, Percent_Identity=24.8554913294798, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI19913428, Length=344, Percent_Identity=24.4186046511628, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI50345984, Length=421, Percent_Identity=25.6532066508314, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI4757810, Length=421, Percent_Identity=25.6532066508314, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1790170, Length=469, Percent_Identity=65.4584221748401, Blast_Score=617, Evalue=1e-178,
Organism=Escherichia coli, GI1788251, Length=314, Percent_Identity=30.2547770700637, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1790172, Length=430, Percent_Identity=26.2790697674419, Blast_Score=108, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=65.4008438818565, Blast_Score=613, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17565854, Length=361, Percent_Identity=28.5318559556787, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17510931, Length=387, Percent_Identity=24.2894056847545, Blast_Score=101, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=425, Percent_Identity=25.8823529411765, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=425, Percent_Identity=25.8823529411765, Blast_Score=99, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17570191, Length=336, Percent_Identity=24.4047619047619, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=330, Percent_Identity=26.3636363636364, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=465, Percent_Identity=67.741935483871, Blast_Score=620, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319603, Length=344, Percent_Identity=26.453488372093, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=235, Percent_Identity=28.0851063829787, Blast_Score=91, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6319370, Length=378, Percent_Identity=27.5132275132275, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24638766, Length=476, Percent_Identity=67.6470588235294, Blast_Score=635, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=474, Percent_Identity=63.5021097046413, Blast_Score=591, Evalue=1e-169,
Organism=Drosophila melanogaster, GI20129479, Length=350, Percent_Identity=27.1428571428571, Blast_Score=132, Evalue=7e-31,
Organism=Drosophila melanogaster, GI24583988, Length=356, Percent_Identity=27.247191011236, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583986, Length=356, Percent_Identity=27.247191011236, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583984, Length=356, Percent_Identity=27.247191011236, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583992, Length=327, Percent_Identity=26.9113149847095, Blast_Score=121, Evalue=8e-28,
Organism=Drosophila melanogaster, GI281361666, Length=388, Percent_Identity=25, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24646341, Length=388, Percent_Identity=25, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17136796, Length=388, Percent_Identity=25, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24658560, Length=380, Percent_Identity=27.3684210526316, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24638768, Length=99, Percent_Identity=47.4747474747475, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51775; Mature: 51775

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGRVSQVLGPVVDVRFEDGHLPEIYNAIKVTHKAQNENEVDIDLTLEVALHLGDDSVR
CCCCCHHHHHCCHHEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCEE
TIAMASTDGVTRGMEAIDLGEPISVPVGNVTLGRVFNVLGENIDLDEPLPADAAKDPIHR
EEEEECCCCHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
EAPKFDQLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
GISVFAGVGERTREGNDLYYEMKDSGVIGKTAMVFGQMNEPPGARMRVALTGLTMAEHFR
CEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHEEECCCCCCCCEEEEEEEHHHHHHHHC
DKEGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSV
CCCCCEEEHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
TSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVG
EEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCHHCC
EEHYEVARSVQQILQRYKELQDIIAMLGMDELSDEDKLVVSRARRVQFFLSQNFHVAEQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
TGQKGSYVPVKETVKGFKEILEGKYDHLPEDAFRLVGRIEEVVEKAKEMGVEV
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKGRVSQVLGPVVDVRFEDGHLPEIYNAIKVTHKAQNENEVDIDLTLEVALHLGDDSVR
CCCCCHHHHHCCHHEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCEE
TIAMASTDGVTRGMEAIDLGEPISVPVGNVTLGRVFNVLGENIDLDEPLPADAAKDPIHR
EEEEECCCCHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
EAPKFDQLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
GISVFAGVGERTREGNDLYYEMKDSGVIGKTAMVFGQMNEPPGARMRVALTGLTMAEHFR
CEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHEEECCCCCCCCEEEEEEEHHHHHHHHC
DKEGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSV
CCCCCEEEHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
TSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVG
EEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCHHCC
EEHYEVARSVQQILQRYKELQDIIAMLGMDELSDEDKLVVSRARRVQFFLSQNFHVAEQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
TGQKGSYVPVKETVKGFKEILEGKYDHLPEDAFRLVGRIEEVVEKAKEMGVEV
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA