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The map label for this gene is fdhD

Identifier: 52787594

GI number: 52787594

Start: 3741114

End: 3741905

Strand: Reverse

Name: fdhD

Synonym: BLi03916

Alternate gene names: 52787594

Gene position: 3741905-3741114 (Counterclockwise)

Preceding gene: 52787597

Following gene: 52787593

Centisome position: 88.62

GC content: 47.98

Gene sequence:

>792_bases
ATGGGGAAAAACATCACAACAAGCCGAAAAATTTTCCGTTATGATAATGGAGAGCTGGTGCAGCAAGAAGATCAGATGGC
GACGGAATTCCCCCTGACTGTCATGGTGAACGGCGAGGAATTTGTCACGCTTGTTTGCTCGCCGGACAGCCTGGAAGAAC
TGGTGATCGGATTTCTCGCATCTGAAGGGGTGATCCGATTTAAAAATGAGATTAAAAGGTTTACAATAGATGAAAGCCTC
GGGTTCGCATATGTCGACCTTGTCAGCACAAAAAAGCTGCAGCTGAAGGATTACACAAAGCGGGTGATCGGCTCCTGCTG
CGGAAAAGGGAGGCATTTTTATTTCCAGCAGGACGTCAAAACCGCAAAAACAGCGATTGACGGCGTGACCATTACGCCAG
AGAACTGTTTGAAGCTGATGCGCGACATGCAGAAAAGCAGCAAGCTTTTTCACCATACGGGGGGCGTTCATAATGCCGCT
TTGTGCAGCACAGACAAGCTGATTGCAGTCAGATCTGATATCGGAAGGCATAATGCGCTTGATAAATTGTACGGATATTG
TTTGCTTCATCAGGTTCCTGTGCGCGATAAGCTGATCGTATTCAGCGGCAGAATTTCTTCGGAAGTGCTGCTTAAAGCCG
CGAAAATCGGGGTTTCCGCGGTCATTTCCAAGTCGGCGCCGACCGAGCTGGCCATTCAGATGGCAGAGGAGCTGAATATC
ATGACGATTGGTTTTGCGAGAAACCGGTCATTCAATGTATACACGCATCACGAGCGAATTCAGTTTTCATAA

Upstream 100 bases:

>100_bases
AACAAGATGAAGCTTCCAAATTTGACCTGACGGTTGTGAAACGGCATGATAGACGAGTATAGTAATAGATATAGTAAGAA
ACAAAGGGGCGGAGTTATTC

Downstream 100 bases:

>100_bases
AAGGAGGCAACAGGCGTGAACACCAACAGTGAACAAGTTTTGGATCAGAAAAGCCGGCCGCTTCGGGATTTAAGAATTTC
TGTCACCGACCGCTGCAACT

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MGKNITTSRKIFRYDNGELVQQEDQMATEFPLTVMVNGEEFVTLVCSPDSLEELVIGFLASEGVIRFKNEIKRFTIDESL
GFAYVDLVSTKKLQLKDYTKRVIGSCCGKGRHFYFQQDVKTAKTAIDGVTITPENCLKLMRDMQKSSKLFHHTGGVHNAA
LCSTDKLIAVRSDIGRHNALDKLYGYCLLHQVPVRDKLIVFSGRISSEVLLKAAKIGVSAVISKSAPTELAIQMAEELNI
MTIGFARNRSFNVYTHHERIQFS

Sequences:

>Translated_263_residues
MGKNITTSRKIFRYDNGELVQQEDQMATEFPLTVMVNGEEFVTLVCSPDSLEELVIGFLASEGVIRFKNEIKRFTIDESL
GFAYVDLVSTKKLQLKDYTKRVIGSCCGKGRHFYFQQDVKTAKTAIDGVTITPENCLKLMRDMQKSSKLFHHTGGVHNAA
LCSTDKLIAVRSDIGRHNALDKLYGYCLLHQVPVRDKLIVFSGRISSEVLLKAAKIGVSAVISKSAPTELAIQMAEELNI
MTIGFARNRSFNVYTHHERIQFS
>Mature_262_residues
GKNITTSRKIFRYDNGELVQQEDQMATEFPLTVMVNGEEFVTLVCSPDSLEELVIGFLASEGVIRFKNEIKRFTIDESLG
FAYVDLVSTKKLQLKDYTKRVIGSCCGKGRHFYFQQDVKTAKTAIDGVTITPENCLKLMRDMQKSSKLFHHTGGVHNAAL
CSTDKLIAVRSDIGRHNALDKLYGYCLLHQVPVRDKLIVFSGRISSEVLLKAAKIGVSAVISKSAPTELAIQMAEELNIM
TIGFARNRSFNVYTHHERIQFS

Specific function: Necessary for formate dehydrogenase activity

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family

Homologues:

Organism=Escherichia coli, GI1790329, Length=265, Percent_Identity=28.6792452830189, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHD_BACLD (Q65DY4)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_080994.1
- RefSeq:   YP_093423.1
- ProteinModelPortal:   Q65DY4
- SMR:   Q65DY4
- STRING:   Q65DY4
- EnsemblBacteria:   EBBACT00000057446
- EnsemblBacteria:   EBBACT00000060843
- GeneID:   3027837
- GeneID:   3101216
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03916
- KEGG:   bli:BL04008
- NMPDR:   fig|279010.5.peg.4001
- eggNOG:   COG1526
- GeneTree:   EBGT00050000001547
- HOGENOM:   HBG732883
- OMA:   CCGMSRQ
- ProtClustDB:   PRK00724
- BioCyc:   BLIC279010-1:BLI03916-MONOMER
- BioCyc:   BLIC279010:BL04008-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00187
- InterPro:   IPR003786
- TIGRFAMs:   TIGR00129

Pfam domain/function: PF02634 FdhD-NarQ

EC number: NA

Molecular weight: Translated: 29504; Mature: 29372

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKNITTSRKIFRYDNGELVQQEDQMATEFPLTVMVNGEEFVTLVCSPDSLEELVIGFLA
CCCCCCCCCEEEEECCCCEECHHHHHHHHCCEEEEECCCEEEEEEECCCCHHHHHHHHHH
SEGVIRFKNEIKRFTIDESLGFAYVDLVSTKKLQLKDYTKRVIGSCCGKGRHFYFQQDVK
CCCEEEEHHHHHEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHH
TAKTAIDGVTITPENCLKLMRDMQKSSKLFHHTGGVHNAALCSTDKLIAVRSDIGRHNAL
HHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEHHHCCCHHHH
DKLYGYCLLHQVPVRDKLIVFSGRISSEVLLKAAKIGVSAVISKSAPTELAIQMAEELNI
HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCHHHEECCCCCHHHHHHHHHHCCE
MTIGFARNRSFNVYTHHERIQFS
EEEEEECCCCEEEEEECCEEECC
>Mature Secondary Structure 
GKNITTSRKIFRYDNGELVQQEDQMATEFPLTVMVNGEEFVTLVCSPDSLEELVIGFLA
CCCCCCCCEEEEECCCCEECHHHHHHHHCCEEEEECCCEEEEEEECCCCHHHHHHHHHH
SEGVIRFKNEIKRFTIDESLGFAYVDLVSTKKLQLKDYTKRVIGSCCGKGRHFYFQQDVK
CCCEEEEHHHHHEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHH
TAKTAIDGVTITPENCLKLMRDMQKSSKLFHHTGGVHNAALCSTDKLIAVRSDIGRHNAL
HHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEHHHCCCHHHH
DKLYGYCLLHQVPVRDKLIVFSGRISSEVLLKAAKIGVSAVISKSAPTELAIQMAEELNI
HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCHHHEECCCCCHHHHHHHHHHCCE
MTIGFARNRSFNVYTHHERIQFS
EEEEEECCCCEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA