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The map label for this gene is ywmD [H]

Identifier: 52787597

GI number: 52787597

Start: 3745860

End: 3746531

Strand: Reverse

Name: ywmD [H]

Synonym: BLi03919

Alternate gene names: 52787597

Gene position: 3746531-3745860 (Counterclockwise)

Preceding gene: 52787598

Following gene: 52787594

Centisome position: 88.72

GC content: 43.3

Gene sequence:

>672_bases
TTGACAACGTTCACCATGCTTTTGTCATTGGCGCCGGCAGCAGCTTTTGCGGCTGAAAACGGAAATGCGGACAACAGCAA
AAAAGATGTCAATGTTGCAGTTGTGCTTGACGCAAGCGGCAGCATGGCACAAAAGGTTGAAGGAGAAAGAAAATTTGATA
TTGCCAAAGAATCCGTAACCGATTTTGCCGACCTGCTTTCAAGCGATGCGAATGTCATGCTGAATGTTTTCGGACATAAA
GGCAACAATAAAAACTCAGGAAAAGAAGTATCCTGCGGTACGACTGAAACCGTCTATGATCTGCAGCCGTTTTCTTTCAA
TTCATTCGAAAACGCTTTAAGCGGAATCAAGCCTACAGGCTGGTCTCCGATTGCAAAATCTCTTTATGATGTAAAAGATG
ATCTTGCCGATAAAGATGGGAAGAATTATGTCTACATCGTGACAGACGGTGAAGAAACATGCGGAGGGGATCCTGTTCAG
GCAGCAAAAGATCTGCGCAAATCCAACATTAAAACGATCGTCAACATTGTTGGGCTGGATGTAAAAACCGTGAAAGAAAA
AGCAAAGCTTAAAAAAGTAGCTGACGCCGGCGGCGGAAAATTGATTGAAGCCGACTCAGCTTCTGATTTTAAAAAGGTAT
GGAAAGAAGAAGGCGTAAAACTGTCTCAGTAA

Upstream 100 bases:

>100_bases
TCTTTTACGATGTTGGTGGACTTGATCTCATGCGGAAGATCGGTCCGAAAAAACAAATGCGGAAAGGAAAGTGAGAAAGT
TGAAAAAGAGGTTTGCTCTG

Downstream 100 bases:

>100_bases
CTCCATACGAGAACGGGACGGCAGCAGAGCCGTCCCGACTGTTAAGCTAATCGGTCGACATTTCGAGTTCTTCGATTCGT
TTTTCTGCATAGCGCGGATC

Product: YwmD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTTFTMLLSLAPAAAFAAENGNADNSKKDVNVAVVLDASGSMAQKVEGERKFDIAKESVTDFADLLSSDANVMLNVFGHK
GNNKNSGKEVSCGTTETVYDLQPFSFNSFENALSGIKPTGWSPIAKSLYDVKDDLADKDGKNYVYIVTDGEETCGGDPVQ
AAKDLRKSNIKTIVNIVGLDVKTVKEKAKLKKVADAGGGKLIEADSASDFKKVWKEEGVKLSQ

Sequences:

>Translated_223_residues
MTTFTMLLSLAPAAAFAAENGNADNSKKDVNVAVVLDASGSMAQKVEGERKFDIAKESVTDFADLLSSDANVMLNVFGHK
GNNKNSGKEVSCGTTETVYDLQPFSFNSFENALSGIKPTGWSPIAKSLYDVKDDLADKDGKNYVYIVTDGEETCGGDPVQ
AAKDLRKSNIKTIVNIVGLDVKTVKEKAKLKKVADAGGGKLIEADSASDFKKVWKEEGVKLSQ
>Mature_222_residues
TTFTMLLSLAPAAAFAAENGNADNSKKDVNVAVVLDASGSMAQKVEGERKFDIAKESVTDFADLLSSDANVMLNVFGHKG
NNKNSGKEVSCGTTETVYDLQPFSFNSFENALSGIKPTGWSPIAKSLYDVKDDLADKDGKNYVYIVTDGEETCGGDPVQA
AKDLRKSNIKTIVNIVGLDVKTVKEKAKLKKVADAGGGKLIEADSASDFKKVWKEEGVKLSQ

Specific function: Unknown

COG id: COG2304

COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ywmC [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002035 [H]

Pfam domain/function: PF00092 VWA [H]

EC number: NA

Molecular weight: Translated: 23825; Mature: 23694

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFTMLLSLAPAAAFAAENGNADNSKKDVNVAVVLDASGSMAQKVEGERKFDIAKESVT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCHHHHHHHHHHH
DFADLLSSDANVMLNVFGHKGNNKNSGKEVSCGTTETVYDLQPFSFNSFENALSGIKPTG
HHHHHHCCCCCEEEEEEECCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHCCCCCCC
WSPIAKSLYDVKDDLADKDGKNYVYIVTDGEETCGGDPVQAAKDLRKSNIKTIVNIVGLD
CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
VKTVKEKAKLKKVADAGGGKLIEADSASDFKKVWKEEGVKLSQ
HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTFTMLLSLAPAAAFAAENGNADNSKKDVNVAVVLDASGSMAQKVEGERKFDIAKESVT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCHHHHHHHHHHH
DFADLLSSDANVMLNVFGHKGNNKNSGKEVSCGTTETVYDLQPFSFNSFENALSGIKPTG
HHHHHHCCCCCEEEEEEECCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHCCCCCCC
WSPIAKSLYDVKDDLADKDGKNYVYIVTDGEETCGGDPVQAAKDLRKSNIKTIVNIVGLD
CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
VKTVKEKAKLKKVADAGGGKLIEADSASDFKKVWKEEGVKLSQ
HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]