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The map label for this gene is opuCD [H]

Identifier: 52787333

GI number: 52787333

Start: 3475546

End: 3476223

Strand: Reverse

Name: opuCD [H]

Synonym: BLi03648

Alternate gene names: 52787333

Gene position: 3476223-3475546 (Counterclockwise)

Preceding gene: 52787334

Following gene: 52787330

Centisome position: 82.32

GC content: 55.31

Gene sequence:

>678_bases
ATGGAAGTGCTGCAGCAGCTTTGGACGTATTACGCGCAAAACGGCGGCTATGTGCTGGGGGAATTTTACCGCCACTTTTT
AATGTCGGCATACGGCGTATTGTTCGCCGCCGTCGTCGGCATCCCGGCCGGCATTTTCATCGCCAGATACCGTAAAATCA
GCAAATGGGTCTTTTCCATCACTAATGTCATTCAAACGGTTCCGGCGCTGGCGATGCTCGCCGTCTTGATGCTTGTCATG
GGGCTCGGCGCAAACACGGTGATTCTTTCATTGTTTTTGTATTCGCTGTTGCCGATCATTCGAAACACATATACGGGAAT
CGCCAGCATCGAGCATGCCTATCTTGAATCAGGGAAGGCGATGGGCATGACGAAATTTCAAGTGCTCCGGATGGTGGAGC
TTCCCCTCGCCTTGTCGGTCATTATGGCGGGGCTCAGAACCGCGCTCGTCATCGCGATCGGCATTACGGCCATCGGCACG
TTTGTCGGCGCAGGCGGCCTCGGGGATATCATTGTCAGGGGATCAAACGCGACCAACGGAACAGCGATCATTCTAGCAGG
CGCGATCCCGACGGCGCTGATGGCGATCATCGCCGATCTGTTCATGGGATGGCTCGAGCGTGCGCTGAGCCCCGTTAAGC
ATCATAAAGGCAAGACGCCGAATCCGGATGCCGCTTAA

Upstream 100 bases:

>100_bases
CTCAATTACGAAGTCGATGGAAAGCTGAAAGAGCCTTCTGTCGTCGCGGCCGAGTTTTTAAAGAAGCACAATTATTTTGA
GTAAAAGGAGGGGATGACAA

Downstream 100 bases:

>100_bases
GGCAGCCGAAAAAAGCCGAACTTCTCCTAAAAGGGAAATTCGGCTTTTTATGATTGGCGCTTCTTCGCTTCATTAACCAA
AAAATGAAAATACTGTTCGA

Product: binding-protein-dependent transport system inner membrane protein OpuCD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MEVLQQLWTYYAQNGGYVLGEFYRHFLMSAYGVLFAAVVGIPAGIFIARYRKISKWVFSITNVIQTVPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIASIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDIIVRGSNATNGTAIILAGAIPTALMAIIADLFMGWLERALSPVKHHKGKTPNPDAA

Sequences:

>Translated_225_residues
MEVLQQLWTYYAQNGGYVLGEFYRHFLMSAYGVLFAAVVGIPAGIFIARYRKISKWVFSITNVIQTVPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIASIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDIIVRGSNATNGTAIILAGAIPTALMAIIADLFMGWLERALSPVKHHKGKTPNPDAA
>Mature_225_residues
MEVLQQLWTYYAQNGGYVLGEFYRHFLMSAYGVLFAAVVGIPAGIFIARYRKISKWVFSITNVIQTVPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIASIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDIIVRGSNATNGTAIILAGAIPTALMAIIADLFMGWLERALSPVKHHKGKTPNPDAA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=194, Percent_Identity=40.7216494845361, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788451, Length=207, Percent_Identity=32.3671497584541, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1789033, Length=166, Percent_Identity=31.9277108433735, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786564, Length=215, Percent_Identity=28.8372093023256, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24060; Mature: 24060

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVLQQLWTYYAQNGGYVLGEFYRHFLMSAYGVLFAAVVGIPAGIFIARYRKISKWVFSI
CHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TNVIQTVPALAMLAVLMLVMGLGANTVILSLFLYSLLPIIRNTYTGIASIEHAYLESGKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDIIVRGSNATNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
TAIILAGAIPTALMAIIADLFMGWLERALSPVKHHKGKTPNPDAA
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEVLQQLWTYYAQNGGYVLGEFYRHFLMSAYGVLFAAVVGIPAGIFIARYRKISKWVFSI
CHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TNVIQTVPALAMLAVLMLVMGLGANTVILSLFLYSLLPIIRNTYTGIASIEHAYLESGKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDIIVRGSNATNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
TAIILAGAIPTALMAIIADLFMGWLERALSPVKHHKGKTPNPDAA
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]